add r-metaseqr2

2 files changed, 142 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..89270e33e2d1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,63 @@
+pkgbase = r-metaseqr2
+	pkgdesc = An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms
+	pkgver = 1.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/metaseqR2
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-absseq
+	depends = r-bayseq
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biomart
+	depends = r-biostrings
+	depends = r-corrplot
+	depends = r-deseq2
+	depends = r-dss
+	depends = r-dt
+	depends = r-edaseq
+	depends = r-edger
+	depends = r-genefilter
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-gplots
+	depends = r-harmonicmeanp
+	depends = r-heatmaply
+	depends = r-htmltools
+	depends = r-httr
+	depends = r-iranges
+	depends = r-jsonlite
+	depends = r-limma
+	depends = r-locfit
+	depends = r-log4r
+	depends = r-magrittr
+	depends = r-nbpseq
+	depends = r-pander
+	depends = r-qvalue
+	depends = r-rmarkdown
+	depends = r-rmdformats
+	depends = r-rsamtools
+	depends = r-rsqlite
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	depends = r-survcomp
+	depends = r-venndiagram
+	depends = r-vsn
+	depends = r-yaml
+	depends = r-zoo
+	optdepends = r-biocmanager
+	optdepends = r-bsgenome
+	optdepends = r-knitr
+	optdepends = r-rmysql
+	optdepends = r-runit
+	optdepends = r-tcc
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/metaseqR2_1.8.0.tar.gz
+	sha256sums = dcccce3e48dc2795553f07bec5ef1dbe81fba546e52a8ab3699b7af75dcbf96b
+
+pkgname = r-metaseqr2
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..856a3b646804
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,79 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=metaseqR2
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-absseq
+  r-bayseq
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-biomart
+  r-biostrings
+  r-corrplot
+  r-deseq2
+  r-dss
+  r-dt
+  r-edaseq
+  r-edger
+  r-genefilter
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicfeatures
+  r-genomicranges
+  r-gplots
+  r-harmonicmeanp
+  r-heatmaply
+  r-htmltools
+  r-httr
+  r-iranges
+  r-jsonlite
+  r-limma
+  r-locfit
+  r-log4r
+  r-magrittr
+  r-nbpseq
+  r-pander
+  r-qvalue
+  r-rmarkdown
+  r-rmdformats
+  r-rsamtools
+  r-rsqlite
+  r-rtracklayer
+  r-s4vectors
+  r-stringr
+  r-summarizedexperiment
+  r-survcomp
+  r-venndiagram
+  r-vsn
+  r-yaml
+  r-zoo
+)
+optdepends=(
+  r-biocmanager
+  r-bsgenome
+  r-knitr
+  r-rmysql
+  r-runit
+  r-tcc
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('dcccce3e48dc2795553f07bec5ef1dbe81fba546e52a8ab3699b7af75dcbf96b')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: