add r-methreg

2 files changed, 124 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d29cdd89c1e8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,54 @@
+pkgbase = r-methreg
+	pkgdesc = Assessing the regulatory potential of DNA methylation regions or sites on gene transcription
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/MethReg
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-delayedarray
+	depends = r-dplyr
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-iranges
+	depends = r-plyr
+	depends = r-progress
+	depends = r-pscl
+	depends = r-readr
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-sesamedata
+	depends = r-sfsmisc
+	depends = r-stringr
+	depends = r-summarizedexperiment
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-sesame
+	optdepends = r-biocfilecache
+	optdepends = r-biocstyle
+	optdepends = r-biomart
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-doparallel
+	optdepends = r-dorothea
+	optdepends = r-downloader
+	optdepends = r-htmltools
+	optdepends = r-jaspar2020
+	optdepends = r-jpeg
+	optdepends = r-knitr
+	optdepends = r-matrixstats
+	optdepends = r-motifmatchr
+	optdepends = r-parallel
+	optdepends = r-png
+	optdepends = r-r.utils
+	optdepends = r-reshape2
+	optdepends = r-rmarkdown
+	optdepends = r-stager
+	optdepends = r-testthat
+	optdepends = r-tfbstools
+	optdepends = r-viper
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/MethReg_1.6.0.tar.gz
+	sha256sums = 04c8b9aabfce93ebc133f2dd046c2e30ff001c92924a990daead194c64b36384
+
+pkgname = r-methreg
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9b42bc8cbffe
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,70 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=MethReg
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='Assessing the regulatory potential of DNA methylation regions or sites on gene transcription'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-delayedarray
+  r-dplyr
+  r-genomicranges
+  r-ggplot2
+  r-ggpubr
+  r-iranges
+  r-plyr
+  r-progress
+  r-pscl
+  r-readr
+  r-rlang
+  r-s4vectors
+  r-sesamedata
+  r-sfsmisc
+  r-stringr
+  r-summarizedexperiment
+  r-tibble
+  r-tidyr
+  r-sesame
+)
+optdepends=(
+  r-biocfilecache
+  r-biocstyle
+  r-biomart
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-doparallel
+  r-dorothea
+  r-downloader
+  r-htmltools
+  r-jaspar2020
+  r-jpeg
+  r-knitr
+  r-matrixstats
+  r-motifmatchr
+  r-parallel
+  r-png
+  r-r.utils
+  r-reshape2
+  r-rmarkdown
+  r-stager
+  r-testthat
+  r-tfbstools
+  r-viper
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('04c8b9aabfce93ebc133f2dd046c2e30ff001c92924a990daead194c64b36384')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: