add r-methrix

2 files changed, 89 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a0c53b7b2dfe
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-methrix
+	pkgdesc = Fast and efficient summarization of generic bedGraph files from Bisufite sequencing
+	pkgver = 1.10.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/methrix
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-bsgenome
+	depends = r-data.table
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-hdf5array
+	depends = r-iranges
+	depends = r-matrixstats
+	depends = r-rtracklayer
+	depends = r-summarizedexperiment
+	optdepends = r-biostrings
+	optdepends = r-bsgenome.mmusculus.ucsc.mm9
+	optdepends = r-bsseq
+	optdepends = r-dss
+	optdepends = r-genomeinfodb
+	optdepends = r-genomicscores
+	optdepends = r-knitr
+	optdepends = r-mafdb.1kgenomes.phase3.grch38
+	optdepends = r-mafdb.1kgenomes.phase3.hs37d5
+	optdepends = r-plotly
+	optdepends = r-rcolorbrewer
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/methrix_1.10.0.tar.gz
+	sha256sums = 92d93bb3e273307cca204c00b8d18e7efa48d6cfe72206d69053f9b3bfba271c
+
+pkgname = r-methrix
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2198f9ff9566
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=methrix
+_pkgver=1.10.0
+pkgname=r-${_pkgname,,}
+pkgver=1.10.0
+pkgrel=1
+pkgdesc='Fast and efficient summarization of generic bedGraph files from Bisufite sequencing'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-bsgenome
+  r-data.table
+  r-delayedarray
+  r-delayedmatrixstats
+  r-genomicranges
+  r-ggplot2
+  r-hdf5array
+  r-iranges
+  r-matrixstats
+  r-rtracklayer
+  r-summarizedexperiment
+)
+optdepends=(
+  r-biostrings
+  r-bsgenome.mmusculus.ucsc.mm9
+  r-bsseq
+  r-dss
+  r-genomeinfodb
+  r-genomicscores
+  r-knitr
+  r-mafdb.1kgenomes.phase3.grch38
+  r-mafdb.1kgenomes.phase3.hs37d5
+  r-plotly
+  r-rcolorbrewer
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('92d93bb3e273307cca204c00b8d18e7efa48d6cfe72206d69053f9b3bfba271c')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: