add r-methylclock

2 files changed, 89 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..18abc9a44241
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-methylclock
+	pkgdesc = Methylclock - DNA methylation-based clocks
+	pkgver = 1.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/methylclock
+	arch = x86_64
+	license = MIT
+	depends = r
+	depends = r-biobase
+	depends = r-devtools
+	depends = r-dplyr
+	depends = r-dynamictreecut
+	depends = r-experimenthub
+	depends = r-ggplot2
+	depends = r-ggpmisc
+	depends = r-ggpubr
+	depends = r-impute
+	depends = r-methylclockdata
+	depends = r-minfi
+	depends = r-performanceanalytics
+	depends = r-preprocesscore
+	depends = r-quadprog
+	depends = r-rcpp
+	depends = r-rpmm
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-tidyverse
+	depends = r-planet
+	optdepends = r-biocstyle
+	optdepends = r-geoquery
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/methylclock_1.2.0.tar.gz
+	sha256sums = 4e8e1c47cd17e86a09d7d4a831673b3ca7a6bb4fa680d48a0ca997041aa0d901
+
+pkgname = r-methylclock
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..af75f16deebb
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=methylclock
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='Methylclock - DNA methylation-based clocks'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-biobase
+  r-devtools
+  r-dplyr
+  r-dynamictreecut
+  r-experimenthub
+  r-ggplot2
+  r-ggpmisc
+  r-ggpubr
+  r-impute
+  r-methylclockdata
+  r-minfi
+  r-performanceanalytics
+  r-preprocesscore
+  r-quadprog
+  r-rcpp
+  r-rpmm
+  r-tibble
+  r-tidyr
+  r-tidyverse
+  r-planet
+)
+optdepends=(
+  r-biocstyle
+  r-geoquery
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('4e8e1c47cd17e86a09d7d4a831673b3ca7a6bb4fa680d48a0ca997041aa0d901')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: