add r-methylpipe

2 files changed, 74 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c76b0ed8a734
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,29 @@
+pkgbase = r-methylpipe
+	pkgdesc = Base resolution DNA methylation data analysis
+	pkgver = 1.30.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/methylPipe
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-data.table
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-gplots
+	depends = r-gviz
+	depends = r-iranges
+	depends = r-marray
+	depends = r-rsamtools
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	optdepends = r-bsgenome.hsapiens.ucsc.hg18
+	optdepends = r-knitr
+	optdepends = r-methylseekr
+	optdepends = r-txdb.hsapiens.ucsc.hg18.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/methylPipe_1.30.0.tar.gz
+	sha256sums = 2e0ebb067ee9ec42d846210acfd8360fc0b3c85a0857fb18233d8f5b85d29a97
+
+pkgname = r-methylpipe
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..79e62009eca8
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=methylPipe
+_pkgver=1.30.0
+pkgname=r-${_pkgname,,}
+pkgver=1.30.0
+pkgrel=1
+pkgdesc='Base resolution DNA methylation data analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-data.table
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-gplots
+  r-gviz
+  r-iranges
+  r-marray
+  r-rsamtools
+  r-s4vectors
+  r-summarizedexperiment
+)
+optdepends=(
+  r-bsgenome.hsapiens.ucsc.hg18
+  r-knitr
+  r-methylseekr
+  r-txdb.hsapiens.ucsc.hg18.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2e0ebb067ee9ec42d846210acfd8360fc0b3c85a0857fb18233d8f5b85d29a97')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: