Version 1.2.0

2 files changed, 79 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..df61b60f8e70
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-microstasis
+	pkgdesc = Microbiota STability ASsessment via Iterative cluStering
+	pkgver = 1.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/microSTASIS
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-biocparallel
+	depends = r-ggplot2
+	depends = r-ggside
+	depends = r-rlang
+	depends = r-stringr
+	depends = r-treesummarizedexperiment
+	optdepends = r-biocstyle
+	optdepends = r-gghighlight
+	optdepends = r-knitr
+	optdepends = r-refmanager
+	optdepends = r-rmarkdown
+	optdepends = r-sessioninfo
+	optdepends = r-singlecellexperiment
+	optdepends = r-summarizedexperiment
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/microSTASIS_1.2.0.tar.gz
+	md5sums = 7b9b67613eb5e6b69918dffc9d4060d8
+	sha256sums = 9ca497654f2e36d340ea7efad8792b625c30dde10400ae83284464d9ba00a266
+
+pkgname = r-microstasis
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..7ab820e7f443
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,51 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=microSTASIS
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Microbiota STability ASsessment via Iterative cluStering"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-biocparallel
+  r-ggplot2
+  r-ggside
+  r-rlang
+  r-stringr
+  r-treesummarizedexperiment
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-gghighlight
+  r-knitr
+  r-refmanager
+  r-rmarkdown
+  r-sessioninfo
+  r-singlecellexperiment
+  r-summarizedexperiment
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('7b9b67613eb5e6b69918dffc9d4060d8')
+sha256sums=('9ca497654f2e36d340ea7efad8792b625c30dde10400ae83284464d9ba00a266')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}