Version 1.0.0

2 files changed, 83 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..d498207e3411
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-micsqtl
+	pkgdesc = MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/MICSQTL
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-biocparallel
+	depends = r-dirmult
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-ggridges
+	depends = r-glue
+	depends = r-magrittr
+	depends = r-nnls
+	depends = r-purrr
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-tca
+	depends = r-toast
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/MICSQTL_1.0.0.tar.gz
+	md5sums = ec49e08df014da6955d2b6ab7dc77d3b
+	sha256sums = eff898a4768e67af1bc6b1cb6664cf24675f7ba1acbbb8fddc920507370ce1e0
+
+pkgname = r-micsqtl
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1c70ba43155e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=MICSQTL
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="MICSQTL (Multi-omic deconvolution, Integration and Cell-type-specific Quantitative Trait Loci)"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-biocparallel
+  r-dirmult
+  r-ggplot2
+  r-ggpubr
+  r-ggridges
+  r-glue
+  r-magrittr
+  r-nnls
+  r-purrr
+  r-s4vectors
+  r-summarizedexperiment
+  r-tca
+  r-toast
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('ec49e08df014da6955d2b6ab7dc77d3b')
+sha256sums=('eff898a4768e67af1bc6b1cb6664cf24675f7ba1acbbb8fddc920507370ce1e0')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}