add r-miqc

2 files changed, 59 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..c3a0817c8883
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-miqc
+	pkgdesc = Flexible, probabilistic metrics for quality control of scRNA-seq data
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/miQC
+	arch = any
+	license = BSD
+	depends = r
+	depends = r-flexmix
+	depends = r-ggplot2
+	depends = r-singlecellexperiment
+	optdepends = r-biocstyle
+	optdepends = r-biomart
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	optdepends = r-scrnaseq
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/miQC_1.4.0.tar.gz
+	sha256sums = b546e40ec4291a9f411697328f945b6f7d7ef0d4fdf6ddd9c7ea1130b1f1da14
+
+pkgname = r-miqc
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1c5c53ad51a9
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,38 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=miQC
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=1.4.0
+pkgrel=1
+pkgdesc='Flexible, probabilistic metrics for quality control of scRNA-seq data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('BSD')
+depends=(
+  r
+  r-flexmix
+  r-ggplot2
+  r-singlecellexperiment
+)
+optdepends=(
+  r-biocstyle
+  r-biomart
+  r-knitr
+  r-rmarkdown
+  r-scater
+  r-scrnaseq
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('b546e40ec4291a9f411697328f945b6f7d7ef0d4fdf6ddd9c7ea1130b1f1da14')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: