add r-monocle

2 files changed, 108 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..5497ca586ae7
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,46 @@
+pkgbase = r-monocle
+	pkgdesc = Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
+	pkgver = 2.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/monocle
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocviews
+	depends = r-combinat
+	depends = r-ddrtree
+	depends = r-densityclust
+	depends = r-dplyr
+	depends = r-fastica
+	depends = r-ggplot2
+	depends = r-hsmmsinglecell
+	depends = r-igraph
+	depends = r-irlba
+	depends = r-limma
+	depends = r-matrixstats
+	depends = r-pheatmap
+	depends = r-plyr
+	depends = r-proxy
+	depends = r-qlcmatrix
+	depends = r-rann
+	depends = r-rcpp
+	depends = r-reshape2
+	depends = r-rtsne
+	depends = r-slam
+	depends = r-stringr
+	depends = r-tibble
+	depends = r-vgam
+	depends = r-viridis
+	depends = r-leidenbase
+	optdepends = r-destiny
+	optdepends = r-hmisc
+	optdepends = r-knitr
+	optdepends = r-scater
+	optdepends = r-seurat
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/monocle_2.24.0.tar.gz
+	sha256sums = ab51c719f2b9d7fcd32805a057e7e27370e0b0e8f6d5b653f751c808f169d8bb
+
+pkgname = r-monocle
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e1fbdd142081
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,62 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=monocle
+_pkgver=2.24.0
+pkgname=r-${_pkgname,,}
+pkgver=2.24.0
+pkgrel=1
+pkgdesc='Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-biocviews
+  r-combinat
+  r-ddrtree
+  r-densityclust
+  r-dplyr
+  r-fastica
+  r-ggplot2
+  r-hsmmsinglecell
+  r-igraph
+  r-irlba
+  r-limma
+  r-matrixstats
+  r-pheatmap
+  r-plyr
+  r-proxy
+  r-qlcmatrix
+  r-rann
+  r-rcpp
+  r-reshape2
+  r-rtsne
+  r-slam
+  r-stringr
+  r-tibble
+  r-vgam
+  r-viridis
+  r-leidenbase
+)
+optdepends=(
+  r-destiny
+  r-hmisc
+  r-knitr
+  r-scater
+  r-seurat
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ab51c719f2b9d7fcd32805a057e7e27370e0b0e8f6d5b653f751c808f169d8bb')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: