Version 1.0.0

2 files changed, 123 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4f14026189d0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,50 @@
+pkgbase = r-moonlight2r
+	pkgdesc = Identify oncogenes and tumor suppressor genes from omics data
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/Moonlight2R
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-annotationhub
+	depends = r-biobase
+	depends = r-circlize
+	depends = r-clusterprofiler
+	depends = r-complexheatmap
+	depends = r-doparallel
+	depends = r-dose
+	depends = r-dplyr
+	depends = r-easypubmed
+	depends = r-foreach
+	depends = r-fuzzyjoin
+	depends = r-genomicranges
+	depends = r-geoquery
+	depends = r-gplots
+	depends = r-hiver
+	depends = r-magrittr
+	depends = r-org.hs.eg.db
+	depends = r-parmigene
+	depends = r-purrr
+	depends = r-qpdf
+	depends = r-randomforest
+	depends = r-rcolorbrewer
+	depends = r-readr
+	depends = r-rismed
+	depends = r-rtracklayer
+	depends = r-seqminer
+	depends = r-stringr
+	depends = r-tibble
+	depends = r-tidyheatmap
+	depends = r-tidyr
+	optdepends = r-biocstyle
+	optdepends = r-devtools
+	optdepends = r-knitr
+	optdepends = r-png
+	optdepends = r-rmarkdown
+	optdepends = r-roxygen2
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/Moonlight2R_1.0.0.tar.gz
+	md5sums = 45af1bc580f9231cb2a83eae7517d3b8
+	sha256sums = e306a3aa11700652a2f1ada4cec3eed4112ec43d3392da550538b8c4bf6ee909
+
+pkgname = r-moonlight2r
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..56e900e56a46
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,73 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=Moonlight2R
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Identify oncogenes and tumor suppressor genes from omics data"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-annotationhub
+  r-biobase
+  r-circlize
+  r-clusterprofiler
+  r-complexheatmap
+  r-doparallel
+  r-dose
+  r-dplyr
+  r-easypubmed
+  r-foreach
+  r-fuzzyjoin
+  r-genomicranges
+  r-geoquery
+  r-gplots
+  r-hiver
+  r-magrittr
+  r-org.hs.eg.db
+  r-parmigene
+  r-purrr
+  r-qpdf
+  r-randomforest
+  r-rcolorbrewer
+  r-readr
+  r-rismed
+  r-rtracklayer
+  r-seqminer
+  r-stringr
+  r-tibble
+  r-tidyheatmap
+  r-tidyr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-devtools
+  r-knitr
+  r-png
+  r-rmarkdown
+  r-roxygen2
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('45af1bc580f9231cb2a83eae7517d3b8')
+sha256sums=('e306a3aa11700652a2f1ada4cec3eed4112ec43d3392da550538b8c4bf6ee909')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}