Version 1.6.0

2 files changed, 74 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..e5ba11d4ef26
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,29 @@
+pkgbase = r-motif2site
+	pkgdesc = Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/Motif2Site
+	arch = any
+	license = GPL2
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-edger
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-mixtools
+	depends = r-s4vectors
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.ecoli.ncbi.20080805
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-bsgenome.mmusculus.ucsc.mm10
+	optdepends = r-bsgenome.scerevisiae.ucsc.saccer3
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/Motif2Site_1.6.0.tar.gz
+	md5sums = e8228f1deb42f2d4b3867a90a6eba14c
+	sha256sums = 04c6adcdc516e572a34c2842cb61b3929b1e9b97458cbd39260d047f874bc568
+
+pkgname = r-motif2site
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2f460117ffb1
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=Motif2Site
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL2)
+depends=(
+  r-biocgenerics
+  r-biostrings
+  r-bsgenome
+  r-edger
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-iranges
+  r-mixtools
+  r-s4vectors
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.ecoli.ncbi.20080805
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-bsgenome.mmusculus.ucsc.mm10
+  r-bsgenome.scerevisiae.ucsc.saccer3
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('e8228f1deb42f2d4b3867a90a6eba14c')
+sha256sums=('04c6adcdc516e572a34c2842cb61b3929b1e9b97458cbd39260d047f874bc568')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}