add r-msa

2 files changed, 63 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3696b08c4e76
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,23 @@
+pkgbase = r-msa
+	pkgdesc = Multiple Sequence Alignment
+	pkgver = 1.28.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/msa
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-iranges
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = make
+	optdepends = r-ape
+	optdepends = r-biobase
+	optdepends = r-knitr
+	optdepends = r-phangorn
+	optdepends = r-seqinr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/msa_1.28.0.tar.gz
+	sha256sums = d77f8e9bd6d590ce7539c249ff01eaa631ef3ab01064b7d0e2a20e08c9be906e
+
+pkgname = r-msa
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..305bd47813dc
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,40 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=msa
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=1
+pkgdesc='Multiple Sequence Alignment'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-iranges
+  r-rcpp
+  r-s4vectors
+  make
+)
+optdepends=(
+  r-ape
+  r-biobase
+  r-knitr
+  r-phangorn
+  r-seqinr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d77f8e9bd6d590ce7539c249ff01eaa631ef3ab01064b7d0e2a20e08c9be906e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: