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| author | Sukanka | 2022-06-06 16:20:09 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 16:20:09 +0800 |
| commit | 8fbd9b88e769840dd8db8bbb9cbc08098b9906ef (patch) | |
| tree | 9ba5e1ff42920bcd89accd7490c8e7316bdc3691 | |
| download | aur-8fbd9b88e769840dd8db8bbb9cbc08098b9906ef.tar.gz | |
add r-msgbsr
| -rw-r--r-- | .SRCINFO | 29 | ||||
| -rw-r--r-- | PKGBUILD | 45 |
2 files changed, 74 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..bc39976b5238 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,29 @@ +pkgbase = r-msgbsr + pkgdesc = msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions + pkgver = 1.20.0 + pkgrel = 1 + url = https://bioconductor.org/packages/msgbsR + arch = any + license = GPL + depends = r + depends = r-bsgenome + depends = r-easyrnaseq + depends = r-edger + depends = r-genomeinfodb + depends = r-genomicalignments + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-ggbio + depends = r-ggplot2 + depends = r-iranges + depends = r-plyr + depends = r-r.utils + depends = r-rsamtools + depends = r-s4vectors + depends = r-summarizedexperiment + optdepends = r-bsgenome.rnorvegicus.ucsc.rn6 + optdepends = r-roxygen2 + source = https://bioconductor.org/packages/release/bioc/src/contrib/msgbsR_1.20.0.tar.gz + sha256sums = eb84ab0b2dd2ac1562b5d275d5dad86dba5c88fcf9a208d612c04b56a39b2303 + +pkgname = r-msgbsr diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9d91842530e4 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,45 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=msgbsR +_pkgver=1.20.0 +pkgname=r-${_pkgname,,} +pkgver=1.20.0 +pkgrel=1 +pkgdesc='msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-bsgenome + r-easyrnaseq + r-edger + r-genomeinfodb + r-genomicalignments + r-genomicfeatures + r-genomicranges + r-ggbio + r-ggplot2 + r-iranges + r-plyr + r-r.utils + r-rsamtools + r-s4vectors + r-summarizedexperiment +) +optdepends=( + r-bsgenome.rnorvegicus.ucsc.rn6 + r-roxygen2 +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('eb84ab0b2dd2ac1562b5d275d5dad86dba5c88fcf9a208d612c04b56a39b2303') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |