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author | Sukanka | 2022-06-06 16:22:33 +0800 |
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committer | Sukanka | 2022-06-06 16:22:33 +0800 |
commit | 5eae7b9071c4401c27ebd0d8d939468da9f43ad2 (patch) | |
tree | a7d44e8ca5dd211b06919c960f825233592c78b2 | |
download | aur-5eae7b9071c4401c27ebd0d8d939468da9f43ad2.tar.gz |
add r-msimpute
-rw-r--r-- | .SRCINFO | 29 | ||||
-rw-r--r-- | PKGBUILD | 46 |
2 files changed, 75 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..1cb714045d09 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,29 @@ +pkgbase = r-msimpute + pkgdesc = Imputation of label-free mass spectrometry peptides + pkgver = 1.6.0 + pkgrel = 1 + url = https://bioconductor.org/packages/msImpute + arch = any + license = GPL + depends = r + depends = r-data.table + depends = r-dplyr + depends = r-fnn + depends = r-limma + depends = r-matrixstats + depends = r-mvtnorm + depends = r-pdist + depends = r-reticulate + depends = r-scran + depends = r-softimpute + depends = r-tidyr + depends = python + optdepends = r-biocstyle + optdepends = r-complexheatmap + optdepends = r-imputelcmd + optdepends = r-knitr + optdepends = r-rmarkdown + source = https://bioconductor.org/packages/release/bioc/src/contrib/msImpute_1.6.0.tar.gz + sha256sums = db52eedd91d8bff9681320559ec0b5ef954c64f27dced0ad2342bc2135585887 + +pkgname = r-msimpute diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5f18ab94b64a --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# system requirements: python +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=msImpute +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=1.6.0 +pkgrel=1 +pkgdesc='Imputation of label-free mass spectrometry peptides' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-data.table + r-dplyr + r-fnn + r-limma + r-matrixstats + r-mvtnorm + r-pdist + r-reticulate + r-scran + r-softimpute + r-tidyr + python +) +optdepends=( + r-biocstyle + r-complexheatmap + r-imputelcmd + r-knitr + r-rmarkdown +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('db52eedd91d8bff9681320559ec0b5ef954c64f27dced0ad2342bc2135585887') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |