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authorSukanka2022-06-06 16:22:33 +0800
committerSukanka2022-06-06 16:22:33 +0800
commit5eae7b9071c4401c27ebd0d8d939468da9f43ad2 (patch)
treea7d44e8ca5dd211b06919c960f825233592c78b2
downloadaur-5eae7b9071c4401c27ebd0d8d939468da9f43ad2.tar.gz
add r-msimpute
-rw-r--r--.SRCINFO29
-rw-r--r--PKGBUILD46
2 files changed, 75 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..1cb714045d09
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,29 @@
+pkgbase = r-msimpute
+ pkgdesc = Imputation of label-free mass spectrometry peptides
+ pkgver = 1.6.0
+ pkgrel = 1
+ url = https://bioconductor.org/packages/msImpute
+ arch = any
+ license = GPL
+ depends = r
+ depends = r-data.table
+ depends = r-dplyr
+ depends = r-fnn
+ depends = r-limma
+ depends = r-matrixstats
+ depends = r-mvtnorm
+ depends = r-pdist
+ depends = r-reticulate
+ depends = r-scran
+ depends = r-softimpute
+ depends = r-tidyr
+ depends = python
+ optdepends = r-biocstyle
+ optdepends = r-complexheatmap
+ optdepends = r-imputelcmd
+ optdepends = r-knitr
+ optdepends = r-rmarkdown
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/msImpute_1.6.0.tar.gz
+ sha256sums = db52eedd91d8bff9681320559ec0b5ef954c64f27dced0ad2342bc2135585887
+
+pkgname = r-msimpute
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5f18ab94b64a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,46 @@
+# system requirements: python
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=msImpute
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='Imputation of label-free mass spectrometry peptides'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+ r
+ r-data.table
+ r-dplyr
+ r-fnn
+ r-limma
+ r-matrixstats
+ r-mvtnorm
+ r-pdist
+ r-reticulate
+ r-scran
+ r-softimpute
+ r-tidyr
+ python
+)
+optdepends=(
+ r-biocstyle
+ r-complexheatmap
+ r-imputelcmd
+ r-knitr
+ r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('db52eedd91d8bff9681320559ec0b5ef954c64f27dced0ad2342bc2135585887')
+
+build() {
+ R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+ install -dm0755 "${pkgdir}/usr/lib/R/library"
+ cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: