add r-msnbase

2 files changed, 126 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ca56082dc8e9
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,55 @@
+pkgbase = r-msnbase
+	pkgdesc = Base Functions and Classes for Mass Spectrometry and Proteomics
+	pkgver = 2.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/MSnbase
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-affy
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-digest
+	depends = r-ggplot2
+	depends = r-impute
+	depends = r-iranges
+	depends = r-maldiquant
+	depends = r-mscoreutils
+	depends = r-mzid
+	depends = r-mzr
+	depends = r-pcamethods
+	depends = r-plyr
+	depends = r-protgenerics
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = r-scales
+	depends = r-vsn
+	depends = r-xml
+	optdepends = r-annotationhub
+	optdepends = r-biocstyle
+	optdepends = r-gplots
+	optdepends = r-gridextra
+	optdepends = r-imputelcmd
+	optdepends = r-knitr
+	optdepends = r-magrittr
+	optdepends = r-microbenchmark
+	optdepends = r-msdata
+	optdepends = r-norm
+	optdepends = r-proloc
+	optdepends = r-prolocdata
+	optdepends = r-pryr
+	optdepends = r-rdisop
+	optdepends = r-rgl
+	optdepends = r-rmarkdown
+	optdepends = r-rols
+	optdepends = r-roxygen2
+	optdepends = r-rpx
+	optdepends = r-shiny
+	optdepends = r-summarizedexperiment
+	optdepends = r-testthat
+	optdepends = r-zoo
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/MSnbase_2.22.0.tar.gz
+	sha256sums = a38f0232b8aa8b1713cf5f9071447a3a00c1866f0d82b49f61c672c1c604f6f7
+
+pkgname = r-msnbase
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..7d93d8a62e4d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,71 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=MSnbase
+_pkgver=2.22.0
+pkgname=r-${_pkgname,,}
+pkgver=2.22.0
+pkgrel=1
+pkgdesc='Base Functions and Classes for Mass Spectrometry and Proteomics'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-affy
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-digest
+  r-ggplot2
+  r-impute
+  r-iranges
+  r-maldiquant
+  r-mscoreutils
+  r-mzid
+  r-mzr
+  r-pcamethods
+  r-plyr
+  r-protgenerics
+  r-rcpp
+  r-s4vectors
+  r-scales
+  r-vsn
+  r-xml
+)
+optdepends=(
+  r-annotationhub
+  r-biocstyle
+  r-gplots
+  r-gridextra
+  r-imputelcmd
+  r-knitr
+  r-magrittr
+  r-microbenchmark
+  r-msdata
+  r-norm
+  r-proloc
+  r-prolocdata
+  r-pryr
+  r-rdisop
+  r-rgl
+  r-rmarkdown
+  r-rols
+  r-roxygen2
+  r-rpx
+  r-shiny
+  r-summarizedexperiment
+  r-testthat
+  r-zoo
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('a38f0232b8aa8b1713cf5f9071447a3a00c1866f0d82b49f61c672c1c604f6f7')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: