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author | Pekka Ristola | 2023-12-11 13:37:21 +0200 |
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committer | Pekka Ristola | 2023-12-11 13:37:21 +0200 |
commit | f09a10991e75354b0baf73f8dc1c5b4ee6bd8b0f (patch) | |
tree | 58e4b46da444c17adc9d83edc89d7bee7780359e | |
download | aur-f09a10991e75354b0baf73f8dc1c5b4ee6bd8b0f.tar.gz |
Version 1.6.0
-rw-r--r-- | .SRCINFO | 30 | ||||
-rw-r--r-- | PKGBUILD | 53 |
2 files changed, 83 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..5b335ed5af06 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,30 @@ +pkgbase = r-mudata + pkgdesc = Serialization for MultiAssayExperiment Objects + pkgver = 1.6.0 + pkgrel = 1 + url = https://bioconductor.org/packages/MuData + arch = any + license = GPL3 + checkdepends = r-hdf5array + checkdepends = r-testthat + depends = r-delayedarray + depends = r-multiassayexperiment + depends = r-rhdf5 + depends = r-s4vectors + depends = r-singlecellexperiment + depends = r-summarizedexperiment + optdepends = r-biocstyle + optdepends = r-citefuse + optdepends = r-covr + optdepends = r-fs + optdepends = r-hdf5array + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-scater + optdepends = r-singlecellmultimodal + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/MuData_1.6.0.tar.gz + md5sums = 10ef702e87a5f0517e59c1ccb96b08dc + sha256sums = 5d43b15ec405c0bc3cc1a328773fd76fda63f51555ec57ca10bafaec79dc2e3a + +pkgname = r-mudata diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..9aa1f45121e0 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,53 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=MuData +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Serialization for MultiAssayExperiment Objects" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(GPL3) +depends=( + r-delayedarray + r-multiassayexperiment + r-rhdf5 + r-s4vectors + r-singlecellexperiment + r-summarizedexperiment +) +checkdepends=( + r-hdf5array + r-testthat +) +optdepends=( + r-biocstyle + r-citefuse + r-covr + r-fs + r-hdf5array + r-knitr + r-rmarkdown + r-scater + r-singlecellmultimodal + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('10ef702e87a5f0517e59c1ccb96b08dc') +sha256sums=('5d43b15ec405c0bc3cc1a328773fd76fda63f51555ec57ca10bafaec79dc2e3a') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |