add r-multihiccompare

2 files changed, 73 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..8bdc311390ff
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-multihiccompare
+	pkgdesc = Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available
+	pkgver = 1.14.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/multiHiCcompare
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-aggregation
+	depends = r-biocparallel
+	depends = r-data.table
+	depends = r-dplyr
+	depends = r-edger
+	depends = r-genomeinfodb
+	depends = r-genomeinfodbdata
+	depends = r-genomicranges
+	depends = r-hiccompare
+	depends = r-pbapply
+	depends = r-pheatmap
+	depends = r-qqman
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/multiHiCcompare_1.14.0.tar.gz
+	sha256sums = 67ce5594836a0ae66eb5ae946f5c87152cd7c44543b6e2d1cb7d2113ac21ce55
+
+pkgname = r-multihiccompare
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..663861b56589
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=multiHiCcompare
+_pkgver=1.14.0
+pkgname=r-${_pkgname,,}
+pkgver=1.14.0
+pkgrel=1
+pkgdesc='Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-aggregation
+  r-biocparallel
+  r-data.table
+  r-dplyr
+  r-edger
+  r-genomeinfodb
+  r-genomeinfodbdata
+  r-genomicranges
+  r-hiccompare
+  r-pbapply
+  r-pheatmap
+  r-qqman
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('67ce5594836a0ae66eb5ae946f5c87152cd7c44543b6e2d1cb7d2113ac21ce55')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: