Version 1.0.0

2 files changed, 103 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..9ac2e8ffbe25
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-multirnaflow
+	pkgdesc = An R package for analysing RNA-seq raw counts with several biological conditions and different time points
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/MultiRNAflow
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-biobase
+	depends = r-complexheatmap
+	depends = r-deseq2
+	depends = r-factoextra
+	depends = r-factominer
+	depends = r-ggalluvial
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-ggsci
+	depends = r-gprofiler2
+	depends = r-mfuzz
+	depends = r-plot3d
+	depends = r-plot3drgl
+	depends = r-plyr
+	depends = r-rcolorbrewer
+	depends = r-reshape2
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-scales
+	depends = r-summarizedexperiment
+	depends = r-upsetr
+	optdepends = r-biocgenerics
+	optdepends = r-biocstyle
+	optdepends = r-e1071
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/MultiRNAflow_1.0.0.tar.gz
+	md5sums = cefc109896f4cb34b4ee6a09ae966f42
+	sha256sums = 5e7e81f1e25b61abd3f2cdee0e39527ccd0b92a2029b3d88a148d905478378ed
+
+pkgname = r-multirnaflow
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1735da26afbb
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,63 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=MultiRNAflow
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="An R package for analysing RNA-seq raw counts with several biological conditions and different time points"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-biobase
+  r-complexheatmap
+  r-deseq2
+  r-factoextra
+  r-factominer
+  r-ggalluvial
+  r-ggplot2
+  r-ggrepel
+  r-ggsci
+  r-gprofiler2
+  r-mfuzz
+  r-plot3d
+  r-plot3drgl
+  r-plyr
+  r-rcolorbrewer
+  r-reshape2
+  r-rlang
+  r-s4vectors
+  r-scales
+  r-summarizedexperiment
+  r-upsetr
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocgenerics
+  r-biocstyle
+  r-e1071
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('cefc109896f4cb34b4ee6a09ae966f42')
+sha256sums=('5e7e81f1e25b61abd3f2cdee0e39527ccd0b92a2029b3d88a148d905478378ed')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}