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| author | BioArchLinuxBot | 2023-04-29 06:32:06 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2023-04-29 06:32:06 +0000 |
| commit | 740b1760e1b33e133bed36e67cc243a2a6011547 (patch) | |
| tree | d1434c65b4c6dba774a12ff69fb41e6ee8851c8d | |
| parent | 863573ab64ac1eaad01b67413442cda6bc9c42ea (diff) | |
| download | aur-740b1760e1b33e133bed36e67cc243a2a6011547.tar.gz | |
[lilac] updated to 1.10.0-1
| -rw-r--r-- | .SRCINFO | 29 | ||||
| -rw-r--r-- | PKGBUILD | 29 |
2 files changed, 32 insertions, 26 deletions
@@ -1,6 +1,6 @@ pkgbase = r-musicatk pkgdesc = Mutational Signature Comprehensive Analysis Toolkit - pkgver = 1.8.0 + pkgver = 1.10.0 pkgrel = 1 url = https://bioconductor.org/packages/musicatk arch = any @@ -13,7 +13,6 @@ pkgbase = r-musicatk depends = r-bsgenome.mmusculus.ucsc.mm10 depends = r-bsgenome.mmusculus.ucsc.mm9 depends = r-complexheatmap - depends = r-cowplot depends = r-data.table depends = r-decomptumor2sig depends = r-deconstructsigs @@ -23,6 +22,7 @@ pkgbase = r-musicatk depends = r-genomicfeatures depends = r-genomicranges depends = r-ggplot2 + depends = r-ggpubr depends = r-ggrepel depends = r-gridextra depends = r-gtools @@ -37,34 +37,37 @@ pkgbase = r-musicatk depends = r-rlang depends = r-s4vectors depends = r-shiny - depends = r-shinyalert - depends = r-shinybs - depends = r-shinybusy - depends = r-shinydashboard - depends = r-shinyjqui - depends = r-shinyjs - depends = r-sortable depends = r-stringi depends = r-stringr depends = r-summarizedexperiment - depends = r-tcgabiolinks depends = r-tibble depends = r-tidyr + depends = r-tidyverse depends = r-topicmodels depends = r-txdb.hsapiens.ucsc.hg19.knowngene depends = r-txdb.hsapiens.ucsc.hg38.knowngene depends = r-uwot depends = r-variantannotation - depends = r-withr optdepends = r-biocstyle optdepends = r-covr + optdepends = r-cowplot optdepends = r-knitr optdepends = r-qpdf optdepends = r-rmarkdown + optdepends = r-shinyalert + optdepends = r-shinybs + optdepends = r-shinybusy + optdepends = r-shinydashboard + optdepends = r-shinyjqui + optdepends = r-shinyjs + optdepends = r-shinywidgets + optdepends = r-sortable optdepends = r-survival + optdepends = r-tcgabiolinks optdepends = r-testthat + optdepends = r-withr optdepends = r-xvector - source = https://bioconductor.org/packages/release/bioc/src/contrib/musicatk_1.8.0.tar.gz - sha256sums = eeb5f9421f82f600e42be4369e196aa432a48d1c14176690bf9b4726e19485d0 + source = https://bioconductor.org/packages/release/bioc/src/contrib/musicatk_1.10.0.tar.gz + sha256sums = 8589e4de168fda3d26ed9be65f43fe41618a9299dbdf20cd4e1149e2e355d1f9 pkgname = r-musicatk @@ -1,9 +1,9 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=musicatk -_pkgver=1.8.0 +_pkgver=1.10.0 pkgname=r-${_pkgname,,} -pkgver=1.8.0 +pkgver=1.10.0 pkgrel=1 pkgdesc='Mutational Signature Comprehensive Analysis Toolkit' arch=('any') @@ -18,7 +18,6 @@ depends=( r-bsgenome.mmusculus.ucsc.mm10 r-bsgenome.mmusculus.ucsc.mm9 r-complexheatmap - r-cowplot r-data.table r-decomptumor2sig r-deconstructsigs @@ -28,6 +27,7 @@ depends=( r-genomicfeatures r-genomicranges r-ggplot2 + r-ggpubr r-ggrepel r-gridextra r-gtools @@ -42,38 +42,41 @@ depends=( r-rlang r-s4vectors r-shiny - r-shinyalert - r-shinybs - r-shinybusy - r-shinydashboard - r-shinyjqui - r-shinyjs - r-sortable r-stringi r-stringr r-summarizedexperiment - r-tcgabiolinks r-tibble r-tidyr + r-tidyverse r-topicmodels r-txdb.hsapiens.ucsc.hg19.knowngene r-txdb.hsapiens.ucsc.hg38.knowngene r-uwot r-variantannotation - r-withr ) optdepends=( r-biocstyle r-covr + r-cowplot r-knitr r-qpdf r-rmarkdown + r-shinyalert + r-shinybs + r-shinybusy + r-shinydashboard + r-shinyjqui + r-shinyjs + r-shinywidgets + r-sortable r-survival + r-tcgabiolinks r-testthat + r-withr r-xvector ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('eeb5f9421f82f600e42be4369e196aa432a48d1c14176690bf9b4726e19485d0') +sha256sums=('8589e4de168fda3d26ed9be65f43fe41618a9299dbdf20cd4e1149e2e355d1f9') build() { R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" |