add r-myvariant

2 files changed, 58 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..18e6398c629c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,21 @@
+pkgbase = r-myvariant
+	pkgdesc = Accesses MyVariant.info variant query and annotation services
+	pkgver = 1.26.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/myvariant
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-genomeinfodb
+	depends = r-hmisc
+	depends = r-httr
+	depends = r-jsonlite
+	depends = r-magrittr
+	depends = r-plyr
+	depends = r-s4vectors
+	depends = r-variantannotation
+	optdepends = r-biocstyle
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/myvariant_1.26.0.tar.gz
+	sha256sums = 2963bfba57737c88ce7bce19dd05e297ceb08507309cf2efe8a8384aeb9ddf24
+
+pkgname = r-myvariant
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..a05a033c91ae
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,37 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=myvariant
+_pkgver=1.26.0
+pkgname=r-${_pkgname,,}
+pkgver=1.26.0
+pkgrel=1
+pkgdesc='Accesses MyVariant.info variant query and annotation services'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-genomeinfodb
+  r-hmisc
+  r-httr
+  r-jsonlite
+  r-magrittr
+  r-plyr
+  r-s4vectors
+  r-variantannotation
+)
+optdepends=(
+  r-biocstyle
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('2963bfba57737c88ce7bce19dd05e297ceb08507309cf2efe8a8384aeb9ddf24')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: