add r-mzr

2 files changed, 76 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..41138847ef57
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,31 @@
+pkgbase = r-mzr
+	pkgdesc = parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
+	pkgver = 2.30.0
+	pkgrel = 3
+	url = https://bioconductor.org/packages/mzR
+	arch = x86_64
+	license = Artistic2.0
+	depends = r
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-ncdf4
+	depends = r-protgenerics
+	depends = r-rcpp
+	depends = r-rhdf5lib
+	depends = r-zlibbioc
+	depends = gcc
+	depends = make
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-msdata
+	optdepends = r-mzid
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	optdepends = r-xml
+	options = !lto
+	options = !buildflags
+	options = staticlibs
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/mzR_2.30.0.tar.gz
+	sha256sums = ba318b62d3a5d1297f25360eca1e29f926e7679351cf129ec36b0ab2e0000ab7
+
+pkgname = r-mzr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..19a96e1bbb62
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,45 @@
+# system requirements: C++11, GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=mzR
+_pkgver=2.30.0
+pkgname=r-${_pkgname,,}
+pkgver=2.30.0
+pkgrel=3
+pkgdesc='parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-ncdf4
+  r-protgenerics
+  r-rcpp
+  r-rhdf5lib
+  r-zlibbioc
+  gcc
+  make
+)
+optdepends=(
+  r-biocstyle
+  r-knitr
+  r-msdata
+  r-mzid
+  r-rmarkdown
+  r-runit
+  r-xml
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('ba318b62d3a5d1297f25360eca1e29f926e7679351cf129ec36b0ab2e0000ab7')
+options=(!lto !buildflags staticlibs)
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: