add r-nadfinder

2 files changed, 90 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..4c9716b6fd01
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,37 @@
+pkgbase = r-nadfinder
+	pkgdesc = Call wide peaks for sequencing data
+	pkgver = 1.20.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/NADfinder
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-atacseqqc
+	depends = r-baseline
+	depends = r-biocgenerics
+	depends = r-corrplot
+	depends = r-csaw
+	depends = r-empiricalbrownsmethod
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-limma
+	depends = r-metap
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-signal
+	depends = r-summarizedexperiment
+	depends = r-trackviewer
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.mmusculus.ucsc.mm10
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/NADfinder_1.20.0.tar.gz
+	sha256sums = 1b4653a948262ed746eb0f4c036b520852d5f7ee843aa1b0218a24236371dc7a
+
+pkgname = r-nadfinder
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..df5f651aca93
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,53 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=NADfinder
+_pkgver=1.20.0
+pkgname=r-${_pkgname,,}
+pkgver=1.20.0
+pkgrel=1
+pkgdesc='Call wide peaks for sequencing data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-atacseqqc
+  r-baseline
+  r-biocgenerics
+  r-corrplot
+  r-csaw
+  r-empiricalbrownsmethod
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicranges
+  r-iranges
+  r-limma
+  r-metap
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-signal
+  r-summarizedexperiment
+  r-trackviewer
+)
+optdepends=(
+  r-biocmanager
+  r-biocstyle
+  r-bsgenome.mmusculus.ucsc.mm10
+  r-knitr
+  r-rmarkdown
+  r-runit
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1b4653a948262ed746eb0f4c036b520852d5f7ee843aa1b0218a24236371dc7a')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: