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author | Sukanka | 2022-06-06 16:45:50 +0800 |
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committer | Sukanka | 2022-06-06 16:45:50 +0800 |
commit | fc4e30fc2158e80a77cb4d6d6d32f67a9c0a34dc (patch) | |
tree | 1098f2dd6b6b18a05bb5f3de8bbc4c74dd553117 | |
download | aur-fc4e30fc2158e80a77cb4d6d6d32f67a9c0a34dc.tar.gz |
add r-nanomethviz
-rw-r--r-- | .SRCINFO | 51 | ||||
-rw-r--r-- | PKGBUILD | 68 |
2 files changed, 119 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..e40dbb1fa9f8 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,51 @@ +pkgbase = r-nanomethviz + pkgdesc = Visualise methlation data from Oxford Nanopore sequencing + pkgver = 2.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/NanoMethViz + arch = x86_64 + license = Apache + depends = r + depends = r-annotationdbi + depends = r-assertthat + depends = r-biocsingular + depends = r-bsseq + depends = r-cpp11 + depends = r-data.table + depends = r-dplyr + depends = r-e1071 + depends = r-forcats + depends = r-fs + depends = r-genomicranges + depends = r-ggplot2 + depends = r-ggthemes + depends = r-glue + depends = r-limma + depends = r-patchwork + depends = r-purrr + depends = r-rcpp + depends = r-readr + depends = r-rlang + depends = r-rsamtools + depends = r-rsqlite + depends = r-s4vectors + depends = r-scales + depends = r-scico + depends = r-stringr + depends = r-summarizedexperiment + depends = r-tibble + depends = r-tidyr + depends = r-withr + depends = r-zlibbioc + depends = gcc + optdepends = r-covr + optdepends = r-dss + optdepends = r-homo.sapiens + optdepends = r-knitr + optdepends = r-mus.musculus + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/NanoMethViz_2.2.0.tar.gz + sha256sums = 818a7b18c15ebe791f70b30badaafccda0a1e9de2d285de0f75d9576e11fb363 + +pkgname = r-nanomethviz diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..8b1dd0e79813 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,68 @@ +# system requirements: C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=NanoMethViz +_pkgver=2.2.0 +pkgname=r-${_pkgname,,} +pkgver=2.2.0 +pkgrel=1 +pkgdesc='Visualise methlation data from Oxford Nanopore sequencing' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('Apache') +depends=( + r + r-annotationdbi + r-assertthat + r-biocsingular + r-bsseq + r-cpp11 + r-data.table + r-dplyr + r-e1071 + r-forcats + r-fs + r-genomicranges + r-ggplot2 + r-ggthemes + r-glue + r-limma + r-patchwork + r-purrr + r-rcpp + r-readr + r-rlang + r-rsamtools + r-rsqlite + r-s4vectors + r-scales + r-scico + r-stringr + r-summarizedexperiment + r-tibble + r-tidyr + r-withr + r-zlibbioc + gcc +) +optdepends=( + r-covr + r-dss + r-homo.sapiens + r-knitr + r-mus.musculus + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('818a7b18c15ebe791f70b30badaafccda0a1e9de2d285de0f75d9576e11fb363') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |