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author | Sukanka | 2022-06-06 16:47:26 +0800 |
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committer | Sukanka | 2022-06-06 16:47:26 +0800 |
commit | 93c9a85883d54fbcf2eea19226b6ea786bff9c2c (patch) | |
tree | 7fcbdb24e96e81ba4ad49b563fae654ab9575557 | |
download | aur-93c9a85883d54fbcf2eea19226b6ea786bff9c2c.tar.gz |
add r-nanotator
-rw-r--r-- | .SRCINFO | 31 | ||||
-rw-r--r-- | PKGBUILD | 48 |
2 files changed, 79 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..c3d6b771315e --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,31 @@ +pkgbase = r-nanotator + pkgdesc = Next generation structural variant annotation and classification + pkgver = 1.12.0 + pkgrel = 1 + url = https://bioconductor.org/packages/nanotatoR + arch = any + license = custom + depends = r + depends = r-annotationdbi + depends = r-curl + depends = r-dplyr + depends = r-genomicranges + depends = r-hash + depends = r-httr + depends = r-knitr + depends = r-openxlsx + depends = r-org.hs.eg.db + depends = r-rentrez + depends = r-rlang + depends = r-stringr + depends = r-testthat + depends = r-tidyverse + depends = r-varfrompdb + depends = r-xml + depends = r-xml2r + optdepends = r-rmarkdown + optdepends = r-yaml + source = https://bioconductor.org/packages/release/bioc/src/contrib/nanotatoR_1.12.0.tar.gz + sha256sums = 604ec95858a4abc81dffb055fbb9e0dfb0d8528d7ab91fb79dd855639d30248f + +pkgname = r-nanotator diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..d70b9d2e67b5 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=nanotatoR +_pkgver=1.12.0 +pkgname=r-${_pkgname,,} +pkgver=1.12.0 +pkgrel=1 +pkgdesc='Next generation structural variant annotation and classification' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('custom') +depends=( + r + r-annotationdbi + r-curl + r-dplyr + r-genomicranges + r-hash + r-httr + r-knitr + r-openxlsx + r-org.hs.eg.db + r-rentrez + r-rlang + r-stringr + r-testthat + r-tidyverse + r-varfrompdb + r-xml + r-xml2r +) +optdepends=( + r-rmarkdown + r-yaml +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('604ec95858a4abc81dffb055fbb9e0dfb0d8528d7ab91fb79dd855639d30248f') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |