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author | Sukanka | 2022-06-06 16:48:13 +0800 |
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committer | Sukanka | 2022-06-06 16:48:13 +0800 |
commit | b5198e515eba3ee9ff471b1edb1d44fd9c21be32 (patch) | |
tree | 140cac736bf5da5c5c1ad4b81d67dfe18fb12e17 | |
download | aur-b5198e515eba3ee9ff471b1edb1d44fd9c21be32.tar.gz |
add r-nanotube
-rw-r--r-- | .SRCINFO | 30 | ||||
-rw-r--r-- | PKGBUILD | 46 |
2 files changed, 76 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..3fc9ce172bb2 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,30 @@ +pkgbase = r-nanotube + pkgdesc = An Easy Pipeline for NanoString nCounter Data Analysis + pkgver = 1.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/NanoTube + arch = any + license = GPL + depends = r + depends = r-biobase + depends = r-fgsea + depends = r-ggplot2 + depends = r-limma + depends = r-reshape + optdepends = r-grid + optdepends = r-kableextra + optdepends = r-knitr + optdepends = r-nanostringdiff + optdepends = r-pheatmap + optdepends = r-plotly + optdepends = r-qusage + optdepends = r-rlang + optdepends = r-rmarkdown + optdepends = r-ruv + optdepends = r-shiny + optdepends = r-testthat + optdepends = r-xlsx + source = https://bioconductor.org/packages/release/bioc/src/contrib/NanoTube_1.2.0.tar.gz + sha256sums = c7ac63d2865e04cea984914e73b1a9482f1c090d1fe21cf79f9db752c2eaa038 + +pkgname = r-nanotube diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..021125d265ba --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,46 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=NanoTube +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=1.2.0 +pkgrel=1 +pkgdesc='An Easy Pipeline for NanoString nCounter Data Analysis' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-fgsea + r-ggplot2 + r-limma + r-reshape +) +optdepends=( + r-grid + r-kableextra + r-knitr + r-nanostringdiff + r-pheatmap + r-plotly + r-qusage + r-rlang + r-rmarkdown + r-ruv + r-shiny + r-testthat + r-xlsx +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('c7ac63d2865e04cea984914e73b1a9482f1c090d1fe21cf79f9db752c2eaa038') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |