summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorBioArchLinuxBot2024-05-11 12:05:32 +0000
committerBioArchLinuxBot2024-05-11 12:05:32 +0000
commit61955fe189e249ee4393f0722d92f369a47092cd (patch)
treeea3a7bbd32a3ad917eaef6ca4b565b40cd6e1a39
parent1c0bae6e808eabe94d695520cd7cba26be5506fd (diff)
downloadaur-61955fe189e249ee4393f0722d92f369a47092cd.tar.gz
[lilac] updated to 2.6.0-1
-rw-r--r--.SRCINFO16
-rw-r--r--PKGBUILD31
2 files changed, 23 insertions, 24 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 878839fe0a19..8340bc8bdaf6 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,26 +1,22 @@
pkgbase = r-ngsreports
pkgdesc = Load FastqQC reports and other NGS related files
- pkgver = 2.4.0
+ pkgver = 2.6.0
pkgrel = 1
url = https://bioconductor.org/packages/ngsReports
arch = any
- license = custom
- depends = r
+ license = LGPL-3.0-only
depends = r-biocgenerics
depends = r-biostrings
depends = r-checkmate
depends = r-dplyr
- depends = r-dt
depends = r-forcats
depends = r-ggdendro
depends = r-ggplot2
depends = r-jsonlite
depends = r-lifecycle
depends = r-lubridate
- depends = r-pander
depends = r-patchwork
depends = r-plotly
- depends = r-readr
depends = r-reshape2
depends = r-rlang
depends = r-rmarkdown
@@ -32,10 +28,14 @@ pkgbase = r-ngsreports
depends = r-zoo
optdepends = r-biocstyle
optdepends = r-cairo
+ optdepends = r-dt
optdepends = r-knitr
+ optdepends = r-pander
+ optdepends = r-readr
optdepends = r-testthat
optdepends = r-truncnorm
- source = https://bioconductor.org/packages/release/bioc/src/contrib/ngsReports_2.4.0.tar.gz
- sha256sums = abc115a8dd01244ce57952cfbee1d09b675d40c8141d53c4fc33b4adb1a9145e
+ source = https://bioconductor.org/packages/release/bioc/src/contrib/ngsReports_2.6.0.tar.gz
+ md5sums = c080f808fd3a26fe71440f9c2051bab2
+ b2sums = 09daa5fa3d5cba8fae8cdabde776ae88bc9cd803a20fdae49a8c1fb0a1a946adcbeb954c39ee12541aafcb87eb887b522316fedf6f217963bf7d4065aa7871d4
pkgname = r-ngsreports
diff --git a/PKGBUILD b/PKGBUILD
index 7f86ea423291..22d9d76f4245 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,31 +1,27 @@
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ngsReports
-_pkgver=2.4.0
+_pkgver=2.6.0
pkgname=r-${_pkgname,,}
-pkgver=2.4.0
+pkgver=${_pkgver//-/.}
pkgrel=1
-pkgdesc='Load FastqQC reports and other NGS related files'
-arch=('any')
-url="https://bioconductor.org/packages/${_pkgname}"
-license=('custom')
+pkgdesc="Load FastqQC reports and other NGS related files"
+arch=(any)
+url="https://bioconductor.org/packages/$_pkgname"
+license=('LGPL-3.0-only')
depends=(
- r
r-biocgenerics
r-biostrings
r-checkmate
r-dplyr
- r-dt
r-forcats
r-ggdendro
r-ggplot2
r-jsonlite
r-lifecycle
r-lubridate
- r-pander
r-patchwork
r-plotly
- r-readr
r-reshape2
r-rlang
r-rmarkdown
@@ -39,20 +35,23 @@ depends=(
optdepends=(
r-biocstyle
r-cairo
+ r-dt
r-knitr
+ r-pander
+ r-readr
r-testthat
r-truncnorm
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
-sha256sums=('abc115a8dd01244ce57952cfbee1d09b675d40c8141d53c4fc33b4adb1a9145e')
+md5sums=('c080f808fd3a26fe71440f9c2051bab2')
+b2sums=('09daa5fa3d5cba8fae8cdabde776ae88bc9cd803a20fdae49a8c1fb0a1a946adcbeb954c39ee12541aafcb87eb887b522316fedf6f217963bf7d4065aa7871d4')
build() {
- R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+ mkdir build
+ R CMD INSTALL -l build "$_pkgname"
}
package() {
- install -dm0755 "${pkgdir}/usr/lib/R/library"
- cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
- install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+ install -d "$pkgdir/usr/lib/R/library"
+ cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
-# vim:set ts=2 sw=2 et: