add r-ngsreports

2 files changed, 93 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..6eede5cf750a
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,38 @@
+pkgbase = r-ngsreports
+	pkgdesc = Load FastqQC reports and other NGS related files
+	pkgver = 1.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/ngsReports
+	arch = any
+	license = custom
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-checkmate
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-forcats
+	depends = r-ggdendro
+	depends = r-ggplot2
+	depends = r-lifecycle
+	depends = r-lubridate
+	depends = r-pander
+	depends = r-plotly
+	depends = r-readr
+	depends = r-reshape2
+	depends = r-rmarkdown
+	depends = r-scales
+	depends = r-stringr
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-tidyselect
+	depends = r-zoo
+	optdepends = r-biocstyle
+	optdepends = r-cairo
+	optdepends = r-knitr
+	optdepends = r-testthat
+	optdepends = r-truncnorm
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/ngsReports_1.12.0.tar.gz
+	sha256sums = d07bccaa02746c204037d2ca4bb145a8953ee57dd0a2cc04519ebcdf320f9d75
+
+pkgname = r-ngsreports
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..8adb8ebaebd5
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,55 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=ngsReports
+_pkgver=1.12.0
+pkgname=r-${_pkgname,,}
+pkgver=1.12.0
+pkgrel=1
+pkgdesc='Load FastqQC reports and other NGS related files'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-checkmate
+  r-dplyr
+  r-dt
+  r-forcats
+  r-ggdendro
+  r-ggplot2
+  r-lifecycle
+  r-lubridate
+  r-pander
+  r-plotly
+  r-readr
+  r-reshape2
+  r-rmarkdown
+  r-scales
+  r-stringr
+  r-tibble
+  r-tidyr
+  r-tidyselect
+  r-zoo
+)
+optdepends=(
+  r-biocstyle
+  r-cairo
+  r-knitr
+  r-testthat
+  r-truncnorm
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d07bccaa02746c204037d2ca4bb145a8953ee57dd0a2cc04519ebcdf320f9d75')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: