add r-norce

2 files changed, 129 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..717214e23bcc
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,56 @@
+pkgbase = r-norce
+	pkgdesc = NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment
+	pkgver = 1.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/NoRCE
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biomart
+	depends = r-dbi
+	depends = r-dbplyr
+	depends = r-dplyr
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-go.db
+	depends = r-igraph
+	depends = r-iranges
+	depends = r-keggrest
+	depends = r-png
+	depends = r-rcurl
+	depends = r-reactome.db
+	depends = r-readr
+	depends = r-reshape2
+	depends = r-rsqlite
+	depends = r-rtracklayer
+	depends = r-rwikipathways
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-tidyr
+	depends = r-zlibbioc
+	optdepends = r-biocgenerics
+	optdepends = r-knitr
+	optdepends = r-markdown
+	optdepends = r-methods
+	optdepends = r-org.ce.eg.db
+	optdepends = r-org.dm.eg.db
+	optdepends = r-org.dr.eg.db
+	optdepends = r-org.hs.eg.db
+	optdepends = r-org.mm.eg.db
+	optdepends = r-org.rn.eg.db
+	optdepends = r-org.sc.sgd.db
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-txdb.celegans.ucsc.ce11.refgene
+	optdepends = r-txdb.dmelanogaster.ucsc.dm6.ensgene
+	optdepends = r-txdb.drerio.ucsc.danrer10.refgene
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
+	optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
+	optdepends = r-txdb.rnorvegicus.ucsc.rn6.refgene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/NoRCE_1.8.0.tar.gz
+	sha256sums = 420261627976b1182e7ebd71983b62cf5334abd981ef7a9d8ee4824247d65c9d
+
+pkgname = r-norce
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..f60df3eca53d
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,73 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=NoRCE
+_pkgver=1.8.0
+pkgname=r-${_pkgname,,}
+pkgver=1.8.0
+pkgrel=1
+pkgdesc='NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-annotationdbi
+  r-biomart
+  r-dbi
+  r-dbplyr
+  r-dplyr
+  r-genomicfeatures
+  r-genomicranges
+  r-ggplot2
+  r-go.db
+  r-igraph
+  r-iranges
+  r-keggrest
+  r-png
+  r-rcurl
+  r-reactome.db
+  r-readr
+  r-reshape2
+  r-rsqlite
+  r-rtracklayer
+  r-rwikipathways
+  r-s4vectors
+  r-summarizedexperiment
+  r-tidyr
+  r-zlibbioc
+)
+optdepends=(
+  r-biocgenerics
+  r-knitr
+  r-markdown
+  r-methods
+  r-org.ce.eg.db
+  r-org.dm.eg.db
+  r-org.dr.eg.db
+  r-org.hs.eg.db
+  r-org.mm.eg.db
+  r-org.rn.eg.db
+  r-org.sc.sgd.db
+  r-rmarkdown
+  r-testthat
+  r-txdb.celegans.ucsc.ce11.refgene
+  r-txdb.dmelanogaster.ucsc.dm6.ensgene
+  r-txdb.drerio.ucsc.danrer10.refgene
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+  r-txdb.mmusculus.ucsc.mm10.knowngene
+  r-txdb.rnorvegicus.ucsc.rn6.refgene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('420261627976b1182e7ebd71983b62cf5334abd981ef7a9d8ee4824247d65c9d')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: