add r-nxtirfcore

2 files changed, 122 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..676987222ac8
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,52 @@
+pkgbase = r-nxtirfcore
+	pkgdesc = Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using the IRFinder Engine
+	pkgver = 1.2.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/NxtIRFcore
+	arch = x86_64
+	license = MIT
+	depends = r
+	depends = r-annotationhub
+	depends = r-biocfilecache
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-data.table
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-fst
+	depends = r-genefilter
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-ggplot2
+	depends = r-hdf5array
+	depends = r-iranges
+	depends = r-magrittr
+	depends = r-nxtirfdata
+	depends = r-plotly
+	depends = r-r.utils
+	depends = r-rcpp
+	depends = r-rcppprogress
+	depends = r-rhdf5
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-zlibbioc
+	depends = gcc
+	optdepends = r-crayon
+	optdepends = r-deseq2
+	optdepends = r-doubleexpseq
+	optdepends = r-egg
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-openssl
+	optdepends = r-pheatmap
+	optdepends = r-rmarkdown
+	optdepends = r-rsubread
+	optdepends = r-shiny
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/NxtIRFcore_1.2.0.tar.gz
+	sha256sums = 8049b08b03eb71573a89d3f2af5e99ec908e7107c4f8b461a55e256fae177b63
+
+pkgname = r-nxtirfcore
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..88eca5812026
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,70 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=NxtIRFcore
+_pkgver=1.2.0
+pkgname=r-${_pkgname,,}
+pkgver=1.2.0
+pkgrel=1
+pkgdesc='Core Engine for NxtIRF: a User-Friendly Intron Retention and Alternative Splicing Analysis using the IRFinder Engine'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-annotationhub
+  r-biocfilecache
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-data.table
+  r-delayedarray
+  r-delayedmatrixstats
+  r-fst
+  r-genefilter
+  r-genomeinfodb
+  r-genomicranges
+  r-ggplot2
+  r-hdf5array
+  r-iranges
+  r-magrittr
+  r-nxtirfdata
+  r-plotly
+  r-r.utils
+  r-rcpp
+  r-rcppprogress
+  r-rhdf5
+  r-rtracklayer
+  r-s4vectors
+  r-summarizedexperiment
+  r-zlibbioc
+  gcc
+)
+optdepends=(
+  r-crayon
+  r-deseq2
+  r-doubleexpseq
+  r-egg
+  r-knitr
+  r-limma
+  r-openssl
+  r-pheatmap
+  r-rmarkdown
+  r-rsubread
+  r-shiny
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8049b08b03eb71573a89d3f2af5e99ec908e7107c4f8b461a55e256fae177b63')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: