Version 1.4.0

2 files changed, 77 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..9a9e2fa4df30
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,27 @@
+pkgbase = r-omada
+	pkgdesc = Machine learning tools for automated transcriptome clustering analysis
+	pkgver = 1.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/omada
+	arch = any
+	license = GPL3
+	checkdepends = r-testthat
+	depends = r-clvalid
+	depends = r-dicer
+	depends = r-dplyr
+	depends = r-fpc
+	depends = r-genieclust
+	depends = r-ggplot2
+	depends = r-glmnet
+	depends = r-kernlab
+	depends = r-pdfcluster
+	depends = r-rcpp
+	depends = r-reshape
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/omada_1.4.0.tar.gz
+	md5sums = d214fdb20c51cbce86bf1d34c59cb84b
+	sha256sums = dd15848708994f18842116b7ffaa47d0be82f7419f3775081183938aa6ce665a
+
+pkgname = r-omada
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..41bde3f58a24
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=omada
+_pkgver=1.4.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Machine learning tools for automated transcriptome clustering analysis"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL3)
+depends=(
+  r-clvalid
+  r-dicer
+  r-dplyr
+  r-fpc
+  r-genieclust
+  r-ggplot2
+  r-glmnet
+  r-kernlab
+  r-pdfcluster
+  r-rcpp
+  r-reshape
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('d214fdb20c51cbce86bf1d34c59cb84b')
+sha256sums=('dd15848708994f18842116b7ffaa47d0be82f7419f3775081183938aa6ce665a')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}