add r-omnipathr

2 files changed, 115 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..f2a277e30771
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,49 @@
+pkgbase = r-omnipathr
+	pkgdesc = OmniPath web service client and more
+	pkgver = 3.4.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/OmnipathR
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-checkmate
+	depends = r-crayon
+	depends = r-curl
+	depends = r-digest
+	depends = r-dplyr
+	depends = r-httr
+	depends = r-igraph
+	depends = r-jsonlite
+	depends = r-later
+	depends = r-logger
+	depends = r-magrittr
+	depends = r-progress
+	depends = r-purrr
+	depends = r-rappdirs
+	depends = r-readr
+	depends = r-readxl
+	depends = r-rlang
+	depends = r-stringr
+	depends = r-tibble
+	depends = r-tidyr
+	depends = r-tidyselect
+	depends = r-xml2
+	depends = r-yaml
+	optdepends = r-biocstyle
+	optdepends = r-dnet
+	optdepends = r-ggplot2
+	optdepends = r-ggraph
+	optdepends = r-gprofiler2
+	optdepends = r-knitr
+	optdepends = r-mlrmbo
+	optdepends = r-parallelmap
+	optdepends = r-paramhelpers
+	optdepends = r-rgraphviz
+	optdepends = r-rmarkdown
+	optdepends = r-smoof
+	optdepends = r-suprahex
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/OmnipathR_3.4.0.tar.gz
+	sha256sums = d1bebd4567b5f91deee5a8392c7ec378a02556e7bdc1ff2b3a140f99c076606e
+
+pkgname = r-omnipathr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..7559dc49ed40
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,66 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=OmnipathR
+_pkgver=3.4.0
+pkgname=r-${_pkgname,,}
+pkgver=3.4.0
+pkgrel=1
+pkgdesc='OmniPath web service client and more'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-checkmate
+  r-crayon
+  r-curl
+  r-digest
+  r-dplyr
+  r-httr
+  r-igraph
+  r-jsonlite
+  r-later
+  r-logger
+  r-magrittr
+  r-progress
+  r-purrr
+  r-rappdirs
+  r-readr
+  r-readxl
+  r-rlang
+  r-stringr
+  r-tibble
+  r-tidyr
+  r-tidyselect
+  r-xml2
+  r-yaml
+)
+optdepends=(
+  r-biocstyle
+  r-dnet
+  r-ggplot2
+  r-ggraph
+  r-gprofiler2
+  r-knitr
+  r-mlrmbo
+  r-parallelmap
+  r-paramhelpers
+  r-rgraphviz
+  r-rmarkdown
+  r-smoof
+  r-suprahex
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('d1bebd4567b5f91deee5a8392c7ec378a02556e7bdc1ff2b3a140f99c076606e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: