add r-opencyto

2 files changed, 99 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..eab29c31bbd0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,41 @@
+pkgbase = r-opencyto
+	pkgdesc = Hierarchical Gating Pipeline for flow cytometry data
+	pkgver = 2.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/openCyto
+	arch = x86_64
+	license = custom
+	depends = r
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-clue
+	depends = r-data.table
+	depends = r-flowclust
+	depends = r-flowcore
+	depends = r-flowstats
+	depends = r-flowviz
+	depends = r-flowworkspace
+	depends = r-graph
+	depends = r-gtools
+	depends = r-ks
+	depends = r-ncdfflow
+	depends = r-plyr
+	depends = r-r.utils
+	depends = r-rbgl
+	depends = r-rcolorbrewer
+	depends = r-rcpp
+	depends = r-rrcov
+	optdepends = r-cytoml
+	optdepends = r-flowworkspacedata
+	optdepends = r-ggcyto
+	optdepends = r-knitr
+	optdepends = r-markdown
+	optdepends = r-parallel
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	optdepends = r-tools
+	optdepends = r-utils
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/openCyto_2.8.0.tar.gz
+	sha256sums = 3ee8bc6bdd7273fe41d6ca7167dd1666f5f2ad9ee5b3e53c97e038095476e5db
+
+pkgname = r-opencyto
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..4b076854b86f
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=openCyto
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='Hierarchical Gating Pipeline for flow cytometry data'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('custom')
+depends=(
+  r
+  r-biobase
+  r-biocgenerics
+  r-clue
+  r-data.table
+  r-flowclust
+  r-flowcore
+  r-flowstats
+  r-flowviz
+  r-flowworkspace
+  r-graph
+  r-gtools
+  r-ks
+  r-ncdfflow
+  r-plyr
+  r-r.utils
+  r-rbgl
+  r-rcolorbrewer
+  r-rcpp
+  r-rrcov
+)
+optdepends=(
+  r-cytoml
+  r-flowworkspacedata
+  r-ggcyto
+  r-knitr
+  r-markdown
+  r-parallel
+  r-rmarkdown
+  r-testthat
+  r-tools
+  r-utils
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('3ee8bc6bdd7273fe41d6ca7167dd1666f5f2ad9ee5b3e53c97e038095476e5db')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: