Version 1.0.1

2 files changed, 99 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..37db72a72a94
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,40 @@
+pkgbase = r-orthos
+	pkgdesc = `orthos` is an R package for variance decomposition using conditional variational auto-encoders
+	pkgver = 1.0.1
+	pkgrel = 1
+	url = https://bioconductor.org/packages/orthos
+	arch = any
+	license = MIT
+	depends = r-annotationhub
+	depends = r-basilisk
+	depends = r-biocparallel
+	depends = r-colorspace
+	depends = r-cowplot
+	depends = r-delayedarray
+	depends = r-dplyr
+	depends = r-experimenthub
+	depends = r-ggplot2
+	depends = r-ggpubr
+	depends = r-ggrepel
+	depends = r-ggsci
+	depends = r-hdf5array
+	depends = r-keras
+	depends = r-orthosdata
+	depends = r-plyr
+	depends = r-reticulate
+	depends = r-rlang
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-tensorflow
+	depends = r-tidyr
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-htmltools
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/orthos_1.0.1.tar.gz
+	md5sums = c35d515c0e956e4207b00db662192707
+	sha256sums = 8b7b30496fe70f7dd55c55a87894b01003cc1628100ed0de5f8b71bdaaa62b6a
+
+pkgname = r-orthos
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..5f9ba9910a91
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,59 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=orthos
+_pkgver=1.0.1
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="\`orthos\` is an R package for variance decomposition using conditional variational auto-encoders"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  r-annotationhub
+  r-basilisk
+  r-biocparallel
+  r-colorspace
+  r-cowplot
+  r-delayedarray
+  r-dplyr
+  r-experimenthub
+  r-ggplot2
+  r-ggpubr
+  r-ggrepel
+  r-ggsci
+  r-hdf5array
+  r-keras
+  r-orthosdata
+  r-plyr
+  r-reticulate
+  r-rlang
+  r-s4vectors
+  r-summarizedexperiment
+  r-tensorflow
+  r-tidyr
+)
+optdepends=(
+  r-biocmanager
+  r-biocstyle
+  r-htmltools
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('c35d515c0e956e4207b00db662192707')
+sha256sums=('8b7b30496fe70f7dd55c55a87894b01003cc1628100ed0de5f8b71bdaaa62b6a')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}