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| author | BioArchLinuxBot | 2024-05-04 12:15:58 +0000 |
|---|---|---|
| committer | BioArchLinuxBot | 2024-05-04 12:15:58 +0000 |
| commit | 6a3fe3f3b75fa55cc3420db27146e71b7ceba6ef (patch) | |
| tree | 0571096a32e23a8bbf190517f75e72d1f6d93f41 | |
| parent | 27f44635b328795cd2d9f81cc848cb523db290d3 (diff) | |
| download | aur-6a3fe3f3b75fa55cc3420db27146e71b7ceba6ef.tar.gz | |
[lilac] updated to 1.22.0-1
| -rw-r--r-- | .SRCINFO | 20 | ||||
| -rw-r--r-- | PKGBUILD | 38 |
2 files changed, 37 insertions, 21 deletions
@@ -1,11 +1,13 @@ pkgbase = r-outrider - pkgdesc = OUTRIDER - OUTlier in RNA-Seq fInDER - pkgver = 1.20.0 + pkgdesc = OUTlier in RNA-Seq fInDER + pkgver = 1.22.0 pkgrel = 1 url = https://bioconductor.org/packages/OUTRIDER arch = x86_64 license = MIT - depends = r + makedepends = r-rcpp + makedepends = r-rcpparmadillo + depends = blas depends = r-bbmisc depends = r-biocgenerics depends = r-biocparallel @@ -15,6 +17,7 @@ pkgbase = r-outrider depends = r-genomicfeatures depends = r-genomicranges depends = r-ggplot2 + depends = r-ggrepel depends = r-heatmaply depends = r-iranges depends = r-matrixstats @@ -24,23 +27,26 @@ pkgbase = r-outrider depends = r-plyr depends = r-prroc depends = r-rcolorbrewer - depends = r-rcpp - depends = r-rcpparmadillo depends = r-reshape2 depends = r-s4vectors depends = r-scales depends = r-summarizedexperiment + depends = r-txdbmaker optdepends = r-annotationdbi optdepends = r-beeswarm optdepends = r-biocstyle + optdepends = r-biovizbase optdepends = r-covr + optdepends = r-genomeinfodb + optdepends = r-ggbio optdepends = r-knitr optdepends = r-org.hs.eg.db optdepends = r-rmariadb optdepends = r-rmarkdown optdepends = r-testthat optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene - source = https://bioconductor.org/packages/release/bioc/src/contrib/OUTRIDER_1.20.0.tar.gz - sha256sums = cc932fd6bfa5007137d832ccd8ff5dc0be00cd420c34cec728c033adf0f43afb + source = https://bioconductor.org/packages/release/bioc/src/contrib/OUTRIDER_1.22.0.tar.gz + md5sums = 39a17844ae7054189d35ce3f356eb777 + b2sums = 1d673713354345fba605bb68cbe4fab15e5e5d0a6d74a333866bc49101cbb77bf12d0bc73b12831069f58a1201f248a0573c553042d933bfabfd020095ae2d73 pkgname = r-outrider @@ -1,16 +1,16 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=OUTRIDER -_pkgver=1.20.0 +_pkgver=1.22.0 pkgname=r-${_pkgname,,} -pkgver=1.20.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='OUTRIDER - OUTlier in RNA-Seq fInDER' -arch=('x86_64') -url="https://bioconductor.org/packages/${_pkgname}" +pkgdesc="OUTlier in RNA-Seq fInDER" +arch=(x86_64) +url="https://bioconductor.org/packages/$_pkgname" license=('MIT') depends=( - r + blas r-bbmisc r-biocgenerics r-biocparallel @@ -20,6 +20,7 @@ depends=( r-genomicfeatures r-genomicranges r-ggplot2 + r-ggrepel r-heatmaply r-iranges r-matrixstats @@ -29,18 +30,24 @@ depends=( r-plyr r-prroc r-rcolorbrewer - r-rcpp - r-rcpparmadillo r-reshape2 r-s4vectors r-scales r-summarizedexperiment + r-txdbmaker +) +makedepends=( + r-rcpp + r-rcpparmadillo ) optdepends=( r-annotationdbi r-beeswarm r-biocstyle + r-biovizbase r-covr + r-genomeinfodb + r-ggbio r-knitr r-org.hs.eg.db r-rmariadb @@ -49,15 +56,18 @@ optdepends=( r-txdb.hsapiens.ucsc.hg19.knowngene ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('cc932fd6bfa5007137d832ccd8ff5dc0be00cd420c34cec728c033adf0f43afb') +md5sums=('39a17844ae7054189d35ce3f356eb777') +b2sums=('1d673713354345fba605bb68cbe4fab15e5e5d0a6d74a333866bc49101cbb77bf12d0bc73b12831069f58a1201f248a0573c553042d933bfabfd020095ae2d73') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |