add r-panelcn.mops

2 files changed, 60 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..69e5abade1c7
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,22 @@
+pkgbase = r-panelcn.mops
+	pkgdesc = CNV detection tool for targeted NGS panel data
+	pkgver = 1.18.0
+	pkgrel = 3
+	url = https://bioconductor.org/packages/panelcn.mops
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-cn.mops
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rsamtools
+	depends = r-s4vectors
+	optdepends = r-biocgenerics
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-runit
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/panelcn.mops_1.18.0.tar.gz
+	sha256sums = 1d585ca2f871a159dcb89d5fb2e713bb01b0b3ef0542ec55635b1d3dd4ee26de
+
+pkgname = r-panelcn.mops
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..2aff816b944a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,38 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=panelcn.mops
+_pkgver=1.18.0
+pkgname=r-${_pkgname,,}
+pkgver=1.18.0
+pkgrel=3
+pkgdesc='CNV detection tool for targeted NGS panel data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-cn.mops
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-rsamtools
+  r-s4vectors
+)
+optdepends=(
+  r-biocgenerics
+  r-knitr
+  r-rmarkdown
+  r-runit
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('1d585ca2f871a159dcb89d5fb2e713bb01b0b3ef0542ec55635b1d3dd4ee26de')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: