Version 1.0.0

2 files changed, 73 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..55d6fd69646e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,25 @@
+pkgbase = r-partcnv
+	pkgdesc = Infer locally aneuploid cells using single cell RNA-seq data
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/partCNV
+	arch = any
+	license = GPL2
+	checkdepends = r-testthat
+	depends = r-annotationhub
+	depends = r-data.table
+	depends = r-depmixs4
+	depends = r-genomicranges
+	depends = r-magrittr
+	depends = r-seurat
+	depends = r-singlecellexperiment
+	optdepends = r-biocstyle
+	optdepends = r-iranges
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/partCNV_1.0.0.tar.gz
+	md5sums = e004f2129cbb1fe1e84e33cf223c06f6
+	sha256sums = 4a948e65fe1f20118f9f5642e23fa35b92bfae680b5da1762084e88e187d8a95
+
+pkgname = r-partcnv
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..b4b157e16210
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=partCNV
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="Infer locally aneuploid cells using single cell RNA-seq data"
+arch=(any)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(GPL2)
+depends=(
+  r-annotationhub
+  r-data.table
+  r-depmixs4
+  r-genomicranges
+  r-magrittr
+  r-seurat
+  r-singlecellexperiment
+)
+checkdepends=(
+  r-testthat
+)
+optdepends=(
+  r-biocstyle
+  r-iranges
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('e004f2129cbb1fe1e84e33cf223c06f6')
+sha256sums=('4a948e65fe1f20118f9f5642e23fa35b92bfae680b5da1762084e88e187d8a95')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+}