add r-pathostat

2 files changed, 102 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..251dce25d597
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,43 @@
+pkgbase = r-pathostat
+	pkgdesc = PathoStat Statistical Microbiome Analysis Package
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/PathoStat
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-ape
+	depends = r-biocstyle
+	depends = r-complexheatmap
+	depends = r-corpcor
+	depends = r-deseq2
+	depends = r-devtools
+	depends = r-dplyr
+	depends = r-dt
+	depends = r-edger
+	depends = r-ggplot2
+	depends = r-glmnet
+	depends = r-gmodels
+	depends = r-knitr
+	depends = r-limma
+	depends = r-matrixstats
+	depends = r-phyloseq
+	depends = r-plotly
+	depends = r-plyr
+	depends = r-rcolorbrewer
+	depends = r-rentrez
+	depends = r-reshape2
+	depends = r-rocr
+	depends = r-scales
+	depends = r-shiny
+	depends = r-shinyjs
+	depends = r-tidyr
+	depends = r-vegan
+	depends = r-webshot
+	depends = r-xml
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/PathoStat_1.22.0.tar.gz
+	sha256sums = e9d75278b669f001b00a9cb9f8e1650c40c3bcbcf8eda83693a0f0cc6cde01b8
+
+pkgname = r-pathostat
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..1f6fb2b0ea0b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,59 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=PathoStat
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='PathoStat Statistical Microbiome Analysis Package'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-ape
+  r-biocstyle
+  r-complexheatmap
+  r-corpcor
+  r-deseq2
+  r-devtools
+  r-dplyr
+  r-dt
+  r-edger
+  r-ggplot2
+  r-glmnet
+  r-gmodels
+  r-knitr
+  r-limma
+  r-matrixstats
+  r-phyloseq
+  r-plotly
+  r-plyr
+  r-rcolorbrewer
+  r-rentrez
+  r-reshape2
+  r-rocr
+  r-scales
+  r-shiny
+  r-shinyjs
+  r-tidyr
+  r-vegan
+  r-webshot
+  r-xml
+)
+optdepends=(
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e9d75278b669f001b00a9cb9f8e1650c40c3bcbcf8eda83693a0f0cc6cde01b8')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: