add r-pcatools

2 files changed, 99 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..841bb7b68759
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,41 @@
+pkgbase = r-pcatools
+	pkgdesc = PCAtools: Everything Principal Components Analysis
+	pkgver = 2.8.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/PCAtools
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-beachmat
+	depends = r-bh
+	depends = r-biocparallel
+	depends = r-biocsingular
+	depends = r-cowplot
+	depends = r-delayedarray
+	depends = r-delayedmatrixstats
+	depends = r-dqrng
+	depends = r-ggplot2
+	depends = r-ggrepel
+	depends = r-rcpp
+	depends = r-reshape2
+	depends = gcc
+	optdepends = r-airway
+	optdepends = r-beachmat
+	optdepends = r-biobase
+	optdepends = r-biocgenerics
+	optdepends = r-deseq2
+	optdepends = r-geoquery
+	optdepends = r-ggalt
+	optdepends = r-ggplotify
+	optdepends = r-hgu133a.db
+	optdepends = r-knitr
+	optdepends = r-magrittr
+	optdepends = r-org.hs.eg.db
+	optdepends = r-rmarkdown
+	optdepends = r-rmtstat
+	optdepends = r-scran
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/PCAtools_2.8.0.tar.gz
+	sha256sums = db88ee276d212e29484dec6fefa571c35c91106056fdcb7216da3b04006c440f
+
+pkgname = r-pcatools
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..ef7ed9f1e7c6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,58 @@
+# system requirements: C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=PCAtools
+_pkgver=2.8.0
+pkgname=r-${_pkgname,,}
+pkgver=2.8.0
+pkgrel=1
+pkgdesc='PCAtools: Everything Principal Components Analysis'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-beachmat
+  r-bh
+  r-biocparallel
+  r-biocsingular
+  r-cowplot
+  r-delayedarray
+  r-delayedmatrixstats
+  r-dqrng
+  r-ggplot2
+  r-ggrepel
+  r-rcpp
+  r-reshape2
+  gcc
+)
+optdepends=(
+  r-airway
+  r-beachmat
+  r-biobase
+  r-biocgenerics
+  r-deseq2
+  r-geoquery
+  r-ggalt
+  r-ggplotify
+  r-hgu133a.db
+  r-knitr
+  r-magrittr
+  r-org.hs.eg.db
+  r-rmarkdown
+  r-rmtstat
+  r-scran
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('db88ee276d212e29484dec6fefa571c35c91106056fdcb7216da3b04006c440f')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: