add r-pqsfinder

2 files changed, 78 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..0dc5c2c9471c
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,30 @@
+pkgbase = r-pqsfinder
+	pkgdesc = Identification of potential quadruplex forming sequences
+	pkgver = 2.12.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/pqsfinder
+	arch = x86_64
+	license = BSD
+	depends = r
+	depends = r-bh
+	depends = r-biostrings
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rcpp
+	depends = r-s4vectors
+	depends = make
+	depends = gcc
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg38
+	optdepends = r-ggplot2
+	optdepends = r-gviz
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-rtracklayer
+	optdepends = r-stringi
+	optdepends = r-stringr
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/pqsfinder_2.12.0.tar.gz
+	sha256sums = 04d7523c5c597bed29ae66e23f03a11700a2564b035d3022a8a93cb58b0df4d7
+
+pkgname = r-pqsfinder
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..fc6ea88162f5
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,48 @@
+# system requirements: GNU make, C++11
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=pqsfinder
+_pkgver=2.12.0
+pkgname=r-${_pkgname,,}
+pkgver=2.12.0
+pkgrel=1
+pkgdesc='Identification of potential quadruplex forming sequences'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('BSD')
+depends=(
+  r
+  r-bh
+  r-biostrings
+  r-genomicranges
+  r-iranges
+  r-rcpp
+  r-s4vectors
+  make
+  gcc
+)
+optdepends=(
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-ggplot2
+  r-gviz
+  r-knitr
+  r-rmarkdown
+  r-rtracklayer
+  r-stringi
+  r-stringr
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('04d7523c5c597bed29ae66e23f03a11700a2564b035d3022a8a93cb58b0df4d7')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: