add r-precisetad

2 files changed, 83 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..de8a5d5920d7
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-precisetad
+	pkgdesc = preciseTAD: A machine learning framework for precise TAD boundary prediction
+	pkgver = 1.6.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/preciseTAD
+	arch = any
+	license = MIT
+	depends = r
+	depends = r-caret
+	depends = r-dbscan
+	depends = r-dosnow
+	depends = r-e1071
+	depends = r-foreach
+	depends = r-genomicranges
+	depends = r-gtools
+	depends = r-iranges
+	depends = r-modelmetrics
+	depends = r-pbapply
+	depends = r-proc
+	depends = r-prroc
+	depends = r-randomforest
+	depends = r-rcgh
+	depends = r-s4vectors
+	optdepends = r-bioccheck
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/preciseTAD_1.6.0.tar.gz
+	sha256sums = 0f9eea2686ee6b6e6b64303e0f73e14b369e6c384b0ccdb579cd79628607497e
+
+pkgname = r-precisetad
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..bcdbac4373b2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,50 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=preciseTAD
+_pkgver=1.6.0
+pkgname=r-${_pkgname,,}
+pkgver=1.6.0
+pkgrel=1
+pkgdesc='preciseTAD: A machine learning framework for precise TAD boundary prediction'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('MIT')
+depends=(
+  r
+  r-caret
+  r-dbscan
+  r-dosnow
+  r-e1071
+  r-foreach
+  r-genomicranges
+  r-gtools
+  r-iranges
+  r-modelmetrics
+  r-pbapply
+  r-proc
+  r-prroc
+  r-randomforest
+  r-rcgh
+  r-s4vectors
+)
+optdepends=(
+  r-bioccheck
+  r-biocmanager
+  r-biocstyle
+  r-knitr
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('0f9eea2686ee6b6e6b64303e0f73e14b369e6c384b0ccdb579cd79628607497e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
+}
+# vim:set ts=2 sw=2 et: