add r-primirtss

2 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..3432bf3de7d0
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-primirtss
+	pkgdesc = Prediction of pri-miRNA Transcription Start Site
+	pkgver = 1.14.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/primirTSS
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biostrings
+	depends = r-bsgenome.hsapiens.ucsc.hg38
+	depends = r-dplyr
+	depends = r-genomicranges
+	depends = r-genomicscores
+	depends = r-gviz
+	depends = r-iranges
+	depends = r-jaspar2018
+	depends = r-phastcons100way.ucsc.hg38
+	depends = r-purrr
+	depends = r-r.utils
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-shiny
+	depends = r-stringr
+	depends = r-tfbstools
+	depends = r-tibble
+	depends = r-tidyr
+	optdepends = r-knitr
+	optdepends = r-rmarkdown
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/primirTSS_1.14.0.tar.gz
+	sha256sums = b4ae84790c6b12e197f837e9dc95b5644049b12bc24c529c2cff701e2522a4a6
+
+pkgname = r-primirtss
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..eb6d08d5731e
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=primirTSS
+_pkgver=1.14.0
+pkgname=r-${_pkgname,,}
+pkgver=1.14.0
+pkgrel=1
+pkgdesc='Prediction of pri-miRNA Transcription Start Site'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biostrings
+  r-bsgenome.hsapiens.ucsc.hg38
+  r-dplyr
+  r-genomicranges
+  r-genomicscores
+  r-gviz
+  r-iranges
+  r-jaspar2018
+  r-phastcons100way.ucsc.hg38
+  r-purrr
+  r-r.utils
+  r-rtracklayer
+  r-s4vectors
+  r-shiny
+  r-stringr
+  r-tfbstools
+  r-tibble
+  r-tidyr
+)
+optdepends=(
+  r-knitr
+  r-rmarkdown
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('b4ae84790c6b12e197f837e9dc95b5644049b12bc24c529c2cff701e2522a4a6')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: