add r-pvac

2 files changed, 52 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..ed208f6da8e1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,18 @@
+pkgbase = r-pvac
+	pkgdesc = PCA-based gene filtering for Affymetrix arrays
+	pkgver = 1.44.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/pvac
+	arch = any
+	license = LGPL
+	depends = r
+	depends = r-affy
+	depends = r-biobase
+	optdepends = r-affydata
+	optdepends = r-allmll
+	optdepends = r-genefilter
+	optdepends = r-pbapply
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/pvac_1.44.0.tar.gz
+	sha256sums = 6aa5f0c6caa61fa3788a84598922786d70d1db6e19fdae245cbd87c50ab3ae6e
+
+pkgname = r-pvac
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..e82a460a9206
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,34 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=pvac
+_pkgver=1.44.0
+pkgname=r-${_pkgname,,}
+pkgver=1.44.0
+pkgrel=1
+pkgdesc='PCA-based gene filtering for Affymetrix arrays'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('LGPL')
+depends=(
+  r
+  r-affy
+  r-biobase
+)
+optdepends=(
+  r-affydata
+  r-allmll
+  r-genefilter
+  r-pbapply
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('6aa5f0c6caa61fa3788a84598922786d70d1db6e19fdae245cbd87c50ab3ae6e')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: