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| author | Sukanka | 2022-06-06 19:24:00 +0800 |
|---|---|---|
| committer | Sukanka | 2022-06-06 19:24:00 +0800 |
| commit | 5404b5cfe003561cde96d6684f91edb2ffaa1e9a (patch) | |
| tree | d867801c0fbdb3e82028e1f7408b7f22235b33a8 | |
| download | aur-5404b5cfe003561cde96d6684f91edb2ffaa1e9a.tar.gz | |
add r-qdnaseq
| -rw-r--r-- | .SRCINFO | 31 | ||||
| -rw-r--r-- | PKGBUILD | 47 |
2 files changed, 78 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..6df309fee2a9 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,31 @@ +pkgbase = r-qdnaseq + pkgdesc = Quantitative DNA Sequencing for Chromosomal Aberrations + pkgver = 1.32.0 + pkgrel = 1 + url = https://bioconductor.org/packages/QDNAseq + arch = any + license = GPL + depends = r + depends = r-biobase + depends = r-cghbase + depends = r-cghcall + depends = r-dnacopy + depends = r-future.apply + depends = r-genomicranges + depends = r-iranges + depends = r-matrixstats + depends = r-r.utils + depends = r-rsamtools + optdepends = r-biocstyle + optdepends = r-bsgenome + optdepends = r-digest + optdepends = r-future + optdepends = r-genomeinfodb + optdepends = r-parallelly + optdepends = r-qdnaseq.hg19 + optdepends = r-qdnaseq.mm10 + optdepends = r-r.cache + source = https://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.32.0.tar.gz + sha256sums = 75bbde9b6cc55cd6a47b9f466358033a180b480def2144abdcc93a2a8e066668 + +pkgname = r-qdnaseq diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..5a5108fb4e16 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,47 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=QDNAseq +_pkgver=1.32.0 +pkgname=r-${_pkgname,,} +pkgver=1.32.0 +pkgrel=1 +pkgdesc='Quantitative DNA Sequencing for Chromosomal Aberrations' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biobase + r-cghbase + r-cghcall + r-dnacopy + r-future.apply + r-genomicranges + r-iranges + r-matrixstats + r-r.utils + r-rsamtools +) +optdepends=( + r-biocstyle + r-bsgenome + r-digest + r-future + r-genomeinfodb + r-parallelly + r-qdnaseq.hg19 + r-qdnaseq.mm10 + r-r.cache +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('75bbde9b6cc55cd6a47b9f466358033a180b480def2144abdcc93a2a8e066668') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |