add r-qsea

2 files changed, 82 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..be67d4346317
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,33 @@
+pkgbase = r-qsea
+	pkgdesc = IP-seq data analysis and vizualization
+	pkgver = 1.22.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/qsea
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-gtools
+	depends = r-hmmcopy
+	depends = r-iranges
+	depends = r-limma
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-zoo
+	optdepends = r-biocmanager
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19
+	optdepends = r-knitr
+	optdepends = r-mass
+	optdepends = r-medipsdata
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/qsea_1.22.0.tar.gz
+	sha256sums = 806712c0647998a3fc757b4f3511e5befb65b8bc5db7dda5d136e978a6282747
+
+pkgname = r-qsea
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9d41d6699459
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,49 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=qsea
+_pkgver=1.22.0
+pkgname=r-${_pkgname,,}
+pkgver=1.22.0
+pkgrel=1
+pkgdesc='IP-seq data analysis and vizualization'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-genomeinfodb
+  r-genomicranges
+  r-gtools
+  r-hmmcopy
+  r-iranges
+  r-limma
+  r-rsamtools
+  r-rtracklayer
+  r-zoo
+)
+optdepends=(
+  r-biocmanager
+  r-biocstyle
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-knitr
+  r-mass
+  r-medipsdata
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('806712c0647998a3fc757b4f3511e5befb65b8bc5db7dda5d136e978a6282747')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: