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| author | Pekka Ristola | 2023-12-11 19:33:46 +0200 |
|---|---|---|
| committer | Pekka Ristola | 2023-12-11 19:33:46 +0200 |
| commit | 2366d97edeb956c5ca3615b0d1a55d9564af4ea0 (patch) | |
| tree | 45a9f4c08c0676e490caba6412c2f11d820be8f5 | |
| download | aur-2366d97edeb956c5ca3615b0d1a55d9564af4ea0.tar.gz | |
Version 1.6.0
| -rw-r--r-- | .SRCINFO | 25 | ||||
| -rw-r--r-- | PKGBUILD | 48 |
2 files changed, 73 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..b5c5160c5234 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,25 @@ +pkgbase = r-qsvar + pkgdesc = Generate Quality Surrogate Variable Analysis for Degradation Correction + pkgver = 1.6.0 + pkgrel = 1 + url = https://bioconductor.org/packages/qsvaR + arch = any + license = Artistic2.0 + checkdepends = r-testthat + depends = r-ggplot2 + depends = r-summarizedexperiment + depends = r-sva + optdepends = r-biocfilecache + optdepends = r-biocstyle + optdepends = r-covr + optdepends = r-knitr + optdepends = r-limma + optdepends = r-refmanager + optdepends = r-rmarkdown + optdepends = r-sessioninfo + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/qsvaR_1.6.0.tar.gz + md5sums = e9531cc164f93967a5d5d0469d47f7c7 + sha256sums = 4cf3c4b26e421aed9f6c536fbe48cc21ea14d887311f3a4c46a58e38b94201d8 + +pkgname = r-qsvar diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..7fe520d9b097 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> + +_pkgname=qsvaR +_pkgver=1.6.0 +pkgname=r-${_pkgname,,} +pkgver=${_pkgver//-/.} +pkgrel=1 +pkgdesc="Generate Quality Surrogate Variable Analysis for Degradation Correction" +arch=(any) +url="https://bioconductor.org/packages/${_pkgname}" +license=(Artistic2.0) +depends=( + r-ggplot2 + r-summarizedexperiment + r-sva +) +checkdepends=( + r-testthat +) +optdepends=( + r-biocfilecache + r-biocstyle + r-covr + r-knitr + r-limma + r-refmanager + r-rmarkdown + r-sessioninfo + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('e9531cc164f93967a5d5d0469d47f7c7') +sha256sums=('4cf3c4b26e421aed9f6c536fbe48cc21ea14d887311f3a4c46a58e38b94201d8') + +build() { + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R +} + +package() { + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" +} |