add r-quasr

2 files changed, 91 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..a168423a75c1
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,37 @@
+pkgbase = r-quasr
+	pkgdesc = Quantify and Annotate Short Reads in R
+	pkgver = 1.36.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/QuasR
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-annotationdbi
+	depends = r-biobase
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicfiles
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-rbowtie
+	depends = r-rhtslib
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-shortread
+	optdepends = r-biocstyle
+	optdepends = r-covr
+	optdepends = r-genomicalignments
+	optdepends = r-gviz
+	optdepends = r-knitr
+	optdepends = r-rhisat2
+	optdepends = r-rmarkdown
+	optdepends = r-testthat
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/QuasR_1.36.0.tar.gz
+	sha256sums = 8ede9fb6c4ceb0292ad0c68ef4f7ec8b01a2b361a1c0667226b6cda95a060cd4
+
+pkgname = r-quasr
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..0246257895c2
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,54 @@
+# system requirements: GNU make
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=QuasR
+_pkgver=1.36.0
+pkgname=r-${_pkgname,,}
+pkgver=1.36.0
+pkgrel=1
+pkgdesc='Quantify and Annotate Short Reads in R'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-annotationdbi
+  r-biobase
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicfiles
+  r-genomicranges
+  r-iranges
+  r-rbowtie
+  r-rhtslib
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-shortread
+)
+optdepends=(
+  r-biocstyle
+  r-covr
+  r-genomicalignments
+  r-gviz
+  r-knitr
+  r-rhisat2
+  r-rmarkdown
+  r-testthat
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8ede9fb6c4ceb0292ad0c68ef4f7ec8b01a2b361a1c0667226b6cda95a060cd4')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: