add r-r3cpet

2 files changed, 88 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..32799f3feb12
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,36 @@
+pkgbase = r-r3cpet
+	pkgdesc = 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
+	pkgver = 1.28.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/R3CPET
+	arch = x86_64
+	license = GPL
+	depends = r
+	depends = r-biocgenerics
+	depends = r-clvalid
+	depends = r-data.table
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-ggbio
+	depends = r-ggplot2
+	depends = r-hmisc
+	depends = r-igraph
+	depends = r-iranges
+	depends = r-pheatmap
+	depends = r-rcpp
+	depends = r-rcurl
+	depends = r-reshape2
+	depends = r-s4vectors
+	optdepends = r-annotationdbi
+	optdepends = r-biocstyle
+	optdepends = r-biomart
+	optdepends = r-biovizbase
+	optdepends = r-chippeakanno
+	optdepends = r-knitr
+	optdepends = r-org.hs.eg.db
+	optdepends = r-shiny
+	optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/R3CPET_1.28.0.tar.gz
+	sha256sums = 35416dfe530f886d93241537621ecab8dd8317e2697fa1f57ff2b8cd515ffdc5
+
+pkgname = r-r3cpet
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..c9c9d9688430
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,52 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=R3CPET
+_pkgver=1.28.0
+pkgname=r-${_pkgname,,}
+pkgver=1.28.0
+pkgrel=1
+pkgdesc='3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process'
+arch=('x86_64')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biocgenerics
+  r-clvalid
+  r-data.table
+  r-genomeinfodb
+  r-genomicranges
+  r-ggbio
+  r-ggplot2
+  r-hmisc
+  r-igraph
+  r-iranges
+  r-pheatmap
+  r-rcpp
+  r-rcurl
+  r-reshape2
+  r-s4vectors
+)
+optdepends=(
+  r-annotationdbi
+  r-biocstyle
+  r-biomart
+  r-biovizbase
+  r-chippeakanno
+  r-knitr
+  r-org.hs.eg.db
+  r-shiny
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('35416dfe530f886d93241537621ecab8dd8317e2697fa1f57ff2b8cd515ffdc5')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: