add r-r3cseq

2 files changed, 72 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..8192dbedfe77
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-r3cseq
+	pkgdesc = Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
+	pkgver = 1.42.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/r3Cseq
+	arch = any
+	license = GPL
+	depends = r
+	depends = r-biostrings
+	depends = r-data.table
+	depends = r-genomeinfodb
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-qvalue
+	depends = r-rcolorbrewer
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-sqldf
+	depends = r-vgam
+	optdepends = r-bsgenome.hsapiens.ucsc.hg18.masked
+	optdepends = r-bsgenome.hsapiens.ucsc.hg19.masked
+	optdepends = r-bsgenome.mmusculus.ucsc.mm10.masked
+	optdepends = r-bsgenome.mmusculus.ucsc.mm9.masked
+	optdepends = r-bsgenome.rnorvegicus.ucsc.rn5.masked
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/r3Cseq_1.42.0.tar.gz
+	sha256sums = 8166add41911198e26d34c79ce72633ac72cd16da5c621d82f28751f599decb7
+
+pkgname = r-r3cseq
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..d20727ee6ecf
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=r3Cseq
+_pkgver=1.42.0
+pkgname=r-${_pkgname,,}
+pkgver=1.42.0
+pkgrel=1
+pkgdesc='Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('GPL')
+depends=(
+  r
+  r-biostrings
+  r-data.table
+  r-genomeinfodb
+  r-genomicranges
+  r-iranges
+  r-qvalue
+  r-rcolorbrewer
+  r-rsamtools
+  r-rtracklayer
+  r-sqldf
+  r-vgam
+)
+optdepends=(
+  r-bsgenome.hsapiens.ucsc.hg18.masked
+  r-bsgenome.hsapiens.ucsc.hg19.masked
+  r-bsgenome.mmusculus.ucsc.mm10.masked
+  r-bsgenome.mmusculus.ucsc.mm9.masked
+  r-bsgenome.rnorvegicus.ucsc.rn5.masked
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('8166add41911198e26d34c79ce72633ac72cd16da5c621d82f28751f599decb7')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: