Version 1.0.0

2 files changed, 128 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..017d332e678e
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,50 @@
+pkgbase = r-raer
+	pkgdesc = RNA editing tools in R
+	pkgver = 1.0.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/raer
+	arch = x86_64
+	license = MIT
+	checkdepends = r-edger
+	checkdepends = r-testthat
+	makedepends = r-rhtslib
+	depends = curl
+	depends = r-biocgenerics
+	depends = r-biocparallel
+	depends = r-biostrings
+	depends = r-bsgenome
+	depends = r-cli
+	depends = r-data.table
+	depends = r-genomeinfodb
+	depends = r-genomicalignments
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-iranges
+	depends = r-r.utils
+	depends = r-rsamtools
+	depends = r-rtracklayer
+	depends = r-s4vectors
+	depends = r-singlecellexperiment
+	depends = r-summarizedexperiment
+	optdepends = r-annotationhub
+	optdepends = r-biocstyle
+	optdepends = r-bsgenome.hsapiens.ncbi.grch38
+	optdepends = r-complexheatmap
+	optdepends = r-covr
+	optdepends = r-deseq2
+	optdepends = r-edger
+	optdepends = r-knitr
+	optdepends = r-limma
+	optdepends = r-raerdata
+	optdepends = r-rmarkdown
+	optdepends = r-scater
+	optdepends = r-scran
+	optdepends = r-scuttle
+	optdepends = r-snplocs.hsapiens.dbsnp144.grch38
+	optdepends = r-testthat
+	optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/raer_1.0.0.tar.gz
+	md5sums = 0b5c050626ce21756f90b4f9c967465b
+	sha256sums = 4607eee1ad03f81724d7feae469236b6f7646831309eff928a6bbd9e7e7d8ce9
+
+pkgname = r-raer
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..51786fa568e6
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,78 @@
+# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
+
+_pkgname=raer
+_pkgver=1.0.0
+pkgname=r-${_pkgname,,}
+pkgver=${_pkgver//-/.}
+pkgrel=1
+pkgdesc="RNA editing tools in R"
+arch=(x86_64)
+url="https://bioconductor.org/packages/${_pkgname}"
+license=(MIT)
+depends=(
+  curl
+  r-biocgenerics
+  r-biocparallel
+  r-biostrings
+  r-bsgenome
+  r-cli
+  r-data.table
+  r-genomeinfodb
+  r-genomicalignments
+  r-genomicfeatures
+  r-genomicranges
+  r-iranges
+  r-r.utils
+  r-rsamtools
+  r-rtracklayer
+  r-s4vectors
+  r-singlecellexperiment
+  r-summarizedexperiment
+)
+makedepends=(
+  r-rhtslib
+)
+checkdepends=(
+  r-edger
+  r-testthat
+)
+optdepends=(
+  r-annotationhub
+  r-biocstyle
+  r-bsgenome.hsapiens.ncbi.grch38
+  r-complexheatmap
+  r-covr
+  r-deseq2
+  r-edger
+  r-knitr
+  r-limma
+  r-raerdata
+  r-rmarkdown
+  r-scater
+  r-scran
+  r-scuttle
+  r-snplocs.hsapiens.dbsnp144.grch38
+  r-testthat
+  r-txdb.hsapiens.ucsc.hg38.knowngene
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+md5sums=('0b5c050626ce21756f90b4f9c967465b')
+sha256sums=('4607eee1ad03f81724d7feae469236b6f7646831309eff928a6bbd9e7e7d8ce9')
+
+build() {
+  mkdir -p build
+  R CMD INSTALL "$_pkgname" -l build
+}
+
+check() {
+  cd "$_pkgname/tests"
+  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
+}
+
+package() {
+  install -d "$pkgdir/usr/lib/R/library"
+  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
+
+  install -d "$pkgdir/usr/share/licenses/$pkgname"
+  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
+}