add r-rarevariantvis

2 files changed, 72 insertions, 0 deletions

diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 000000000000..bebc75741f19
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,28 @@
+pkgbase = r-rarevariantvis
+	pkgdesc = A suite for analysis of rare genomic variants in whole genome sequencing data
+	pkgver = 2.24.0
+	pkgrel = 1
+	url = https://bioconductor.org/packages/RareVariantVis
+	arch = any
+	license = Artistic2.0
+	depends = r
+	depends = r-biocgenerics
+	depends = r-bsgenome
+	depends = r-bsgenome.hsapiens.ucsc.hg19
+	depends = r-genomeinfodb
+	depends = r-genomicfeatures
+	depends = r-genomicranges
+	depends = r-genomicscores
+	depends = r-googlevis
+	depends = r-gtools
+	depends = r-iranges
+	depends = r-phastcons100way.ucsc.hg19
+	depends = r-s4vectors
+	depends = r-summarizedexperiment
+	depends = r-txdb.hsapiens.ucsc.hg19.knowngene
+	depends = r-variantannotation
+	optdepends = r-knitr
+	source = https://bioconductor.org/packages/release/bioc/src/contrib/RareVariantVis_2.24.0.tar.gz
+	sha256sums = e1ce40ce8341c40fc1b647e6c08faafd3824d276aaaf0df1a0106d1a1b45d954
+
+pkgname = r-rarevariantvis
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9a992c455316
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
+
+_pkgname=RareVariantVis
+_pkgver=2.24.0
+pkgname=r-${_pkgname,,}
+pkgver=2.24.0
+pkgrel=1
+pkgdesc='A suite for analysis of rare genomic variants in whole genome sequencing data'
+arch=('any')
+url="https://bioconductor.org/packages/${_pkgname}"
+license=('Artistic2.0')
+depends=(
+  r
+  r-biocgenerics
+  r-bsgenome
+  r-bsgenome.hsapiens.ucsc.hg19
+  r-genomeinfodb
+  r-genomicfeatures
+  r-genomicranges
+  r-genomicscores
+  r-googlevis
+  r-gtools
+  r-iranges
+  r-phastcons100way.ucsc.hg19
+  r-s4vectors
+  r-summarizedexperiment
+  r-txdb.hsapiens.ucsc.hg19.knowngene
+  r-variantannotation
+)
+optdepends=(
+  r-knitr
+)
+source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
+sha256sums=('e1ce40ce8341c40fc1b647e6c08faafd3824d276aaaf0df1a0106d1a1b45d954')
+
+build() {
+  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
+}
+
+package() {
+  install -dm0755 "${pkgdir}/usr/lib/R/library"
+  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
+}
+# vim:set ts=2 sw=2 et: